Gene detail

Detail information of GWHGAAZE024135

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601125.1	7.23205E-75	PREDICTED: F-box protein At4g22280 isoform X3 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FFW2\|FBD17_ARATH	5E-31	FBD-associated F-box protein At5g38590
trEMBL	tr\|A0A067KSF7\|A0A067KSF7_JATCU	2E-62	Uncharacterized protein {ECO:0000313\|EMBL:KDP39077.1}
TAIR10	AT5G38590.2	3E-28	F-box/RNI-like/FBD-like domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	35765895	35768404	-
GWHAAZE00000007	mRNA	35765895	35768404	-
GWHAAZE00000007	exon	35765895	35765978	-
GWHAAZE00000007	exon	35766268	35766474	-
GWHAAZE00000007	exon	35767457	35768404	-
GWHAAZE00000007	CDS	35767457	35768404	-
GWHAAZE00000007	CDS	35766268	35766474	-
GWHAAZE00000007	CDS	35765895	35765978	-

Transcript Sequence
>GWHTAAZE024169 ATGGATGCTGACATTAAATTGCCAAGTCTCAAATCTCAGAAGCTAATACATGGCCAGATTCTTGGTGAAGGTGAAGATATAATCAGCAATTTACCAGACGCCGTTATTCATCACATCCTCTCCTTCATTCCTACCAAGGATGTCATAAAAACATGCATATTATCCAAAAGATGGCAATTCTTGTGGACTTCGGTTTCCAACATTGACTTAATTTCAAATAATTGCAAAAAAGACAGTCCCATTTCATCACATAGATTCTTGGATTTTGTGGACAAAGTACTTACTTGCTATTCTTCAAGTATTGAAAAACTCTGTCTATATTATTTTGAGCTCACCGACATATCTCGTGTTAGCAAGTGGATCTCTTCTGCTATTCGTCGTAGAGTTCAAGAACTTTGTCTAAGTAGCCATGTCAGAAGTTCTTTCTTGCCCCATTGCCTTTTAAATTGCAAGTCACTAACAACATTAAAGCTAGAGATGGACTGCATTCTACAAGTTCCTAACTCTATTTGCCTTCCAAATCTAAGAATCCTTTGTCTTTCATTTGTTATATTTTTCAATGATAACTCATTCGAAAATCTTTTCTCTGGTTGTCCCGTCCTTCAAGAATTGTCATTGATGGAATGTGTGTGGAAGAATATAAAAAGGGTTGCCATTTTTGTTCCAACACTGCAAACCTTGGCCATTGATTATTATATGTATGGCAATGATCCAGAAGACTTTCTTGATTGTGAGATTAAGATATATGCGGAGAGAGCCACGTATTTTGACTGCTCGGGTAATTTGACAATCAATATCATGTTATGCAATTTTTCTTTGTTAGATGATGCTTCTATTAGTATTCTCCCTCTGAATTTGAGGCAACAAGAGGTTGGGGTCCGTGGATTCAACCTATTTGAAGGGGTTCGCAATGTCCGGTCTCTATCTATATATCATGAAACCCTTGAGGGAGCTAACATGAACTTGGAATTCAATGTCGAGGATTGGATATCAGCACAGGTACCTCAATGCTTGAAGTCCCGCTTAAAAAATTTCAGCGTCAAGTACTTTTGTGGGAATGAATTAGAGATGCGATTACTAGGGTTTTTCTTGAAGAATGCTAGAATTTTGGAGAAGATGAAGATCTATTGTGGGGAAAATTTGAATAAGGATGAGATTAATGAAACTGCTCAATTTGGAACTCTTTTGCACGGGTCAGAGTTTTACAATTTACTCATCGAACTACACCTTTACTCAAAA

Network for GWHGAAZE024135

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	27	66	5.80E-08
PF07723.14	LRR_2	174	199	3.10E-07
PF08387.11	FBD	333	375	8.40E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.112
	SRR3591706	second leaf	1.604
	SRR3591707	mature leaf	2.162
	SRR3591708	Shoot apex	3.469
	SRR3591709	Stem	1.734
	SRR3591710	White floral bud	3.084
	SRR3591711	White flower	3.770
	SRR3591712	Green floral bud	3.997
	SRR3591713	Yellow flower	3.708
SRP173429	SRR8316895	Juvenile bud stage	2.768
	SRR8316896	Juvenile bud stage	3.864
	SRR8316897	Juvenile bud stage	3.184
	SRR8316894	Third green stage	1.811
	SRR8316900	Third green stage	4.684
	SRR8316901	Third green stage	3.125
	SRR8316898	Complete white stage	1.687
	SRR8316899	Complete white stage	5.539
	SRR8316903	Complete white stage	1.445
	SRR8316902	Silver flowering stage	1.401
	SRR8316904	Silver flowering stage	2.025
	SRR8316905	Silver flowering stage	0.921
	SRR8316906	Gold flowering stage	1.615
	SRR8316907	Gold flowering stage	1.424
	SRR8316908	Gold flowering stage	2.155
SRP132670	SRR6706286	Control	0.543
	SRR6706287	Light intensity 50%	0.458
	SRR6706288	Light intensity 20%	0.644
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.837
	CNS0095593	Slightly white alabastrum(diploid) 2	2.224
	CNS0095594	Slightly white alabastrum(diploid) 3	2.416
	CNS0095595	Whole white alabastrum(diploid) 2	2.601
	CNS0095596	Whole white alabastrum(diploid) 3	2.137
	CNS0095597	Whole white alabastrum(diploid) 4	1.304
	CNS0095598	Silvery flower (diploied) 1	4.433
	CNS0095599	Silvery flower (diploied) 2	2.941
	CNS0095600	Silvery flower (diploied) 3	3.751
	CNS0095601	Golden flower (diploid) 1	3.297
	CNS0095602	Golden flower (diploid) 2	3.154
	CNS0095603	Golden flower (diploid) 3	3.229
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.624
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.732
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.353
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.743
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.189
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.795
	CNS0095610	Silvery flower (tetraploid) 1	3.469
	CNS0095611	Silvery flower (tetraploid) 2	4.062
	CNS0095612	Silvery flower (tetraploid) 3	3.648
	CNS0095613	Golden flower (tetraploid) 1	1.741
	CNS0095614	Golden flower (tetraploid) 2	2.691
	CNS0095615	Golden flower (tetraploid) 3	1.817
CRA001975	CRR073297	Stem 1	1.004
	CRR073298	Stem 2	0.755
	CRR073299	Stem 3	0.682
	CRR073300	Leaf 1	0.668
	CRR073301	Leaf 2	0.790
	CRR073302	Leaf 3	0.341
	CRR073303	Juvenile bud 1	0.490
	CRR073304	Juvenile bud 2	0.241
	CRR073305	Juvenile bud 3	0.143
	CRR073306	Third green 1	0.040
	CRR073307	Third green 2	0.050
	CRR073308	Third green 3	0.246
	CRR073309	Second white 1	0.203
	CRR073310	Second white 2	0.905
	CRR073311	Second white 3	0.554
	CRR073312	Silver flowering 1	0.631
	CRR073313	Silver flowering 2	0.230
	CRR073314	Silver flowering 3	0.299
	CRR073315	Gold flowering 1	0.142
	CRR073316	Gold flowering 2	0.170
	CRR073317	Gold flowering 3	0.134
	CRR073318	Tawny withering 1	0.957
	CRR073319	Tawny withering 2	0.796
	CRR073320	Tawny withering 3	0.654