Gene detail

Detail information of GWHGAAZE024157

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009610848.1	1.8358E-133	PREDICTED: peroxidase 43-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SZH2\|PER43_ARATH	2E-128	Peroxidase 43 (Precursor)
trEMBL	tr\|Q8RVP5\|Q8RVP5_GOSHI	2E-128	Class III peroxidase {ECO:0000313\|EMBL:AAL93153.1}
TAIR10	AT4G25980.1	2E-104	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	36372284	36374082	-
GWHAAZE00000007	mRNA	36372284	36374082	-
GWHAAZE00000007	exon	36372284	36372705	-
GWHAAZE00000007	exon	36372827	36372992	-
GWHAAZE00000007	exon	36373257	36373439	-
GWHAAZE00000007	exon	36373876	36374082	-
GWHAAZE00000007	CDS	36373876	36374082	-
GWHAAZE00000007	CDS	36373257	36373439	-
GWHAAZE00000007	CDS	36372827	36372992	-
GWHAAZE00000007	CDS	36372284	36372705	-

Transcript Sequence
>GWHTAAZE024191 ATGGGAATGTTGAATTGTGTGGTTTTGGGTGTGATGATAATGCTGTGTAATGGGATTGGGGTAAAAGGACTGAATATTGGTTTTTACTCCCAAACATGCCCTAATGCAGAGTCCATAGTGATGTCTGTTGTTAAAGAAGCCACTGCCACCAACTCCAGAATCCCTCCTATTCTTCTTCGCCTCCATTTCCATGACTGCTTCGTTGAGGGGTGTGATGGGTCAATTTTGATTGACAACGGTGAAAATATAGAAAAACGCGCAACTGGACATGATGGCGTTGAAGGGTTTGATGAGATAGAGTTGGCCAAAACAAAGTTGGAAGCCGAATGCCCTGGAGTTGTTTCTTGTGCGGACATTGTTGCTATGGCTGCTAGAGATTCTGTTTTCTTGAGTGGTGGGCCATATTATCAAGTTGAGACTGGCCGGAGAGATGGCCGGGTTTCTAATGAATCACTGGCCGCCGACATGCCGGAAGTGAATGACCCCATTGATACTCTTAAGTCTAAGTTCATGAACAAGGGACTCTTCCCCAAAGATCTTGTCCTTCTCACCGCCGGCGCGCATACCATAGGTACAACAGCATGCTTCTTCATGTCGGTGCGACTCTACAACTTTACGGGGAAAAACGACACCGATCGGTCAATCAACCCTCAGTTACTCCAAAAATTAAAAGAAAGTTGTCCACTCAATGGTGATGATAGTGTTCGAATACCTCTTGACCCTGTAACCAGTGAAGTGTTCGACGATCAAGTTATTCGCAATGTTAAGAACGGATTTGCAGTAATAGCATCCGATGCTAGGCTTTACGACGATGACATGACCAAGAATACAATTGAGTCATATCTCAAATTCGCGAGTTTTTCAGGTGGATCGTTCTTAGGAACTGTTTTTTCGCAAGCGATAGTCAAAATGGGTCGGATTGGAGTGAAGACTGGGTCTGATGGAGAGATTAGGCGAGTTTGTCACTCGTTTAATTAG

Network for GWHGAAZE024157

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0095

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	42	282	3.00E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.082
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	69.614
	SRR3591711	White flower	50.745
	SRR3591712	Green floral bud	1.498
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	94.754
	SRR8316896	Juvenile bud stage	0.135
	SRR8316897	Juvenile bud stage	1.096
	SRR8316894	Third green stage	28.530
	SRR8316900	Third green stage	0.271
	SRR8316901	Third green stage	0.189
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	215.530
	SRR8316903	Complete white stage	43.982
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.068
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.062
SRP132670	SRR6706286	Control	5.674
	SRR6706287	Light intensity 50%	11.699
	SRR6706288	Light intensity 20%	7.138
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	208.897
	CNS0095593	Slightly white alabastrum(diploid) 2	51.707
	CNS0095594	Slightly white alabastrum(diploid) 3	88.454
	CNS0095595	Whole white alabastrum(diploid) 2	108.371
	CNS0095596	Whole white alabastrum(diploid) 3	0.330
	CNS0095597	Whole white alabastrum(diploid) 4	49.207
	CNS0095598	Silvery flower (diploied) 1	124.503
	CNS0095599	Silvery flower (diploied) 2	52.054
	CNS0095600	Silvery flower (diploied) 3	120.201
	CNS0095601	Golden flower (diploid) 1	137.777
	CNS0095602	Golden flower (diploid) 2	201.071
	CNS0095603	Golden flower (diploid) 3	199.509
	CNS0095604	Slightly white alabastrum(tetraploid) 1	127.538
	CNS0095605	Slightly white alabastrum(tetraploid) 2	81.366
	CNS0095606	Slightly white alabastrum(tetraploid) 3	185.645
	CNS0095607	Whole white alabastrum(tetraploid) 1	66.392
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.110
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.086
	CNS0095610	Silvery flower (tetraploid) 1	0.081
	CNS0095611	Silvery flower (tetraploid) 2	73.662
	CNS0095612	Silvery flower (tetraploid) 3	4.674
	CNS0095613	Golden flower (tetraploid) 1	0.105
	CNS0095614	Golden flower (tetraploid) 2	0.097
	CNS0095615	Golden flower (tetraploid) 3	0.071
CRA001975	CRR073297	Stem 1	0.124
	CRR073298	Stem 2	0.173
	CRR073299	Stem 3	0.096
	CRR073300	Leaf 1	0.050
	CRR073301	Leaf 2	0.046
	CRR073302	Leaf 3	0.421
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.070
	CRR073306	Third green 1	0.473
	CRR073307	Third green 2	0.081
	CRR073308	Third green 3	0.125
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	24.713
	CRR073319	Tawny withering 2	23.855
	CRR073320	Tawny withering 3	44.951