Gene detail

Detail information of GWHGAAZE024158

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	P14674.1ADH2_SOLTU	0	RecName: Full=Alcohol dehydrogenase 2 [Solanum tuberosum]
COG	YP_003147226.1	2E-138	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
Swissprot	tr\|P14674\|ADH2_SOLTU	0	Alcohol dehydrogenase 2
trEMBL	tr\|Q6IVK8\|Q6IVK8_TOBAC	0	ADH-like UDP-glucose dehydrogenase {ECO:0000313\|EMBL:AAT40104.1}
TAIR10	AT1G77120.1	1E-159	alcohol dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	36394390	36397028	-
GWHAAZE00000007	mRNA	36394390	36397028	-
GWHAAZE00000007	exon	36396992	36397028	-
GWHAAZE00000007	exon	36396772	36396845	-
GWHAAZE00000007	exon	36396468	36396514	-
GWHAAZE00000007	exon	36396044	36396369	-
GWHAAZE00000007	exon	36395743	36395825	-
GWHAAZE00000007	exon	36395564	36395639	-
GWHAAZE00000007	exon	36395122	36395183	-
GWHAAZE00000007	exon	36394954	36395049	-
GWHAAZE00000007	exon	36394630	36394791	-
GWHAAZE00000007	exon	36394390	36394506	-
GWHAAZE00000007	CDS	36396992	36397028	-
GWHAAZE00000007	CDS	36396772	36396845	-
GWHAAZE00000007	CDS	36396468	36396514	-
GWHAAZE00000007	CDS	36396044	36396369	-
GWHAAZE00000007	CDS	36395743	36395825	-
GWHAAZE00000007	CDS	36395564	36395639	-
GWHAAZE00000007	CDS	36395122	36395183	-
GWHAAZE00000007	CDS	36394954	36395049	-
GWHAAZE00000007	CDS	36394630	36394791	-
GWHAAZE00000007	CDS	36394390	36394506	-

Transcript Sequence
>GWHTAAZE024192 ATGTCAAGCACCGCAGGCCAAGTTATACGTTGCAAAGCTGCTGTGGCATGGGAAGCAGGGAAGCCGCTAGTAATGGAGGAAGTTGAGGTAGCTCCTCCACAGAAAATGGAGGGGCAGAACCCTGTGTTTCCTCGAATCTTAGGCCACGAGGCAGGAGGGATTGTTGAGAGTGTTGGAGAGGGGGTGACTGATCTTGAGCCAGGGGACCATGTGCTCCCTGTTTTCACTGGAGAATGCAAAGAATGTGCACACTGCAAATCGAAAGAGAGCAATATGTGTAATCTCCTCCGAATTAACACCGACAGGGGAGTGATGATCAATGACGAGAAATCGAGGTTTTCCATTAATGGAAAGCCAATTTTTCACTTCGTTGGAACATCCACATTTAGTGAGTACACTGTGGTACATGTTGGCTGTGTTGTCAAAATAAACCCCCTTGCTCCTCTTGACAAAGTTTGCATCCTTAGCTGTGGAATCTCCACAGGTCTTGGTGCAACTTTGAATGTGGCCAAACCAACAAAGGGCTCATCAGTGGCTGTGTTTGGATTAGGAGCTGTTGGCCTTGCTGCTGCAGAAGGAGCTCGAATGGCAGGGGCTTCAAGGATCATTGGTGTTGATTTCAACTCAAGCAAATTTGAGCTAGCAAAGAAGTTTGGCGTGACAGAGTTTGTGAACCCACAAGAACATAGCAAACCAGTTCAAGAAGTTATTGCTGAGATGACCGACGGAGGAGTTGACAGAAGCGTTGAATGCACCGGCAACATCAATGCAATGATTTCAGCCTTTGAATGCGTCCATGATGGGTGGGGTGTTGCTGTTCTTGTGGGTGTTCCACATAAAGACGCTGTCTTCAAGACTCACCCTGTGAATTTCTTGAACGAAAGGACACTCAAGGGTACCTTCTTTGGAAACTACAAACCGCGTTCTGATCTTCCTTCTGTTGTTGAAAAATACATGAACAAGGAAATTGAATTGGAGAAATTTATCACGCATGAAGTACCATTTGCTGAGATAAACAAGGCGTTTGAGTACATGCTAAAAGGCGAAGGTCTTCGATGCATCATTCGTATGGATGCTTAA

Network for GWHGAAZE024158

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	39	142	2.70E-16
PF00107.27	ADH_zinc_N	185	312	4.20E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18857	ADH1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Fatty acid degradation	map00071
		alpha-Linolenic acid metabolism	map00592
		Tyrosine metabolism	map00350

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008270	molecular_function	zinc ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.387
	SRR3591706	second leaf	3.628
	SRR3591707	mature leaf	3.118
	SRR3591708	Shoot apex	22.983
	SRR3591709	Stem	12.800
	SRR3591710	White floral bud	9.313
	SRR3591711	White flower	21.115
	SRR3591712	Green floral bud	3.455
	SRR3591713	Yellow flower	0.977
SRP173429	SRR8316895	Juvenile bud stage	1.901
	SRR8316896	Juvenile bud stage	2.231
	SRR8316897	Juvenile bud stage	2.208
	SRR8316894	Third green stage	1.774
	SRR8316900	Third green stage	11.412
	SRR8316901	Third green stage	10.607
	SRR8316898	Complete white stage	3.468
	SRR8316899	Complete white stage	71.659
	SRR8316903	Complete white stage	5.175
	SRR8316902	Silver flowering stage	7.819
	SRR8316904	Silver flowering stage	8.334
	SRR8316905	Silver flowering stage	2.040
	SRR8316906	Gold flowering stage	2.831
	SRR8316907	Gold flowering stage	7.192
	SRR8316908	Gold flowering stage	10.494
SRP132670	SRR6706286	Control	4.788
	SRR6706287	Light intensity 50%	4.488
	SRR6706288	Light intensity 20%	5.621
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.897
	CNS0095593	Slightly white alabastrum(diploid) 2	1.233
	CNS0095594	Slightly white alabastrum(diploid) 3	1.025
	CNS0095595	Whole white alabastrum(diploid) 2	3.014
	CNS0095596	Whole white alabastrum(diploid) 3	1.247
	CNS0095597	Whole white alabastrum(diploid) 4	3.382
	CNS0095598	Silvery flower (diploied) 1	4.970
	CNS0095599	Silvery flower (diploied) 2	3.488
	CNS0095600	Silvery flower (diploied) 3	5.340
	CNS0095601	Golden flower (diploid) 1	4.552
	CNS0095602	Golden flower (diploid) 2	6.267
	CNS0095603	Golden flower (diploid) 3	4.650
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.277
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.370
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.682
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.764
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.859
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.181
	CNS0095610	Silvery flower (tetraploid) 1	4.702
	CNS0095611	Silvery flower (tetraploid) 2	7.513
	CNS0095612	Silvery flower (tetraploid) 3	19.122
	CNS0095613	Golden flower (tetraploid) 1	3.612
	CNS0095614	Golden flower (tetraploid) 2	2.798
	CNS0095615	Golden flower (tetraploid) 3	2.406
CRA001975	CRR073297	Stem 1	4.512
	CRR073298	Stem 2	3.782
	CRR073299	Stem 3	3.687
	CRR073300	Leaf 1	17.136
	CRR073301	Leaf 2	13.448
	CRR073302	Leaf 3	23.623
	CRR073303	Juvenile bud 1	26.068
	CRR073304	Juvenile bud 2	18.249
	CRR073305	Juvenile bud 3	24.290
	CRR073306	Third green 1	1.092
	CRR073307	Third green 2	1.118
	CRR073308	Third green 3	2.934
	CRR073309	Second white 1	2.795
	CRR073310	Second white 2	2.392
	CRR073311	Second white 3	1.946
	CRR073312	Silver flowering 1	2.105
	CRR073313	Silver flowering 2	4.740
	CRR073314	Silver flowering 3	10.026
	CRR073315	Gold flowering 1	17.733
	CRR073316	Gold flowering 2	21.787
	CRR073317	Gold flowering 3	24.575
	CRR073318	Tawny withering 1	242.138
	CRR073319	Tawny withering 2	207.496
	CRR073320	Tawny withering 3	263.157