Gene detail

Detail information of GWHGAAZE024161

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074783.1	0	PREDICTED: acyl-[acyl-carrier-protein] desaturase 6, chloroplastic [Sesamum indicum]
COG	YP_006369323.1	2E-29	Fatty acid desaturase
Swissprot	tr\|Q84VY3\|STAD6_ARATH	0	Acyl-[acyl-carrier-protein] desaturase 6, chloroplastic (Precursor)
trEMBL	tr\|A0A067L3P4\|A0A067L3P4_JATCU	0	Acyl-[acyl-carrier-protein] desaturase {ECO:0000256\|RuleBase:RU000582}
TAIR10	AT1G43800.1	8E-158	Plant stearoyl-acyl-carrier-protein desaturase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	36448339	36450203	-
GWHAAZE00000007	mRNA	36448339	36450203	-
GWHAAZE00000007	exon	36448339	36448905	-
GWHAAZE00000007	exon	36449332	36449641	-
GWHAAZE00000007	exon	36449923	36450203	-
GWHAAZE00000007	CDS	36449923	36450203	-
GWHAAZE00000007	CDS	36449332	36449641	-
GWHAAZE00000007	CDS	36448339	36448905	-

Transcript Sequence
>GWHTAAZE024195 ATGCAGTCCACACTCATCTCTCACCACCCCACCCAACGTGCATGCTTTCCACCTGTCCAACCCTCCACCTACCGCACCACCAAAAAGATCCGCCGTCTACCACCGCCCTCCTCCGTCTCCGCCCCACGCCTCGACCCCCAAATCACCCACTCCCTACCACCGGAAAAAACCGAAGTCTTCAAATCTCTTGAATCCTGGGCCAAAAGATCGGTTCTCCCACTCCTCAAGCCTGTGGACCAATCCTGGCAGCCCACCGAATTCCTCCCCGACCCATCGCAGCCTGGATTTCACGAGGAGGTGCGGGCCCTACGCGAACGGATGGCTGAGATTCCGGACGACTACTTGGTGGTGCTTGTGGGTGATATGATAACGGAGGATGCTTTGCCTACTTATCAGACTATGATTAATACACTTGATGGGGTCCGGGACGAGACTGGGGCGAGCCGGAGCTCGTGGGCTGTGTGGACCCGGGCTTGGACCGCAGAGGAAAACAGGCACGGGGATCTGCTCCGGACTTACTTGTACCTGTCGGGTCGGGTCGATATGGTGATGATTGAGAGGACTGTGCAGTACCTGATTGGAGCTGGCATGGATCCAGGAACAGAAAACAATCCCTATTTGGGCTACGTGTACACGTCCTTCCAAGAGCGAGCGACCTTCATCTCGCACGGCAACACGGCCAGGCTAGCCAAGGAGCGGGGCGAGCCGGTTCTAGCCCGCATATGCGGGACCATTGCGTCCGACGAGAAGCGCCATGAAAACGCCTACACTCGAATCGTCGAGAAACTCCTAGAAGTGGACCCCACCGGTGCCATGCTGGCAATTTCCGACATGATGCGGAAAAAGATCACAATGCCAGCCCACCTAATGTACGACGGGAAAGACCCGCATTTGTTTGAGCATTTCTCAGCCGTGGCCCAGCGGTTGGGGTGTACACGGCCGAGGATTACGCCGGATATACTGGAATTCTTAATCGGACGGTGGAGATTGGAGAAGATTGGGGGATTGAATGCGGAGGGGAGGCGTGCACAGGAGTTTGTATGTGGGTTAGCCCCGAGGATAAGAAAGCTGCAGGAGCGAGCCGATGAGCGGACTAAGAAGCTTGGGCCCAAGGGAGTGAAGTTTAGCTGGATTTTCAATAAGGAGTTGGCTTTGTAA

Network for GWHGAAZE024161

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03405.15	FA_desaturase_2	55	379	7.10E-147

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03921	FAB2, SSI2, desA1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

GO term	Ontology	Name
GO:0006631	biological_process	fatty acid metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0045300	molecular_function	acyl-[acyl-carrier-protein] desaturase activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.428
	SRR3591706	second leaf	1.583
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	3.053
	SRR3591709	Stem	0.798
	SRR3591710	White floral bud	3.362
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	3.444
	SRR3591713	Yellow flower	0.147
SRP173429	SRR8316895	Juvenile bud stage	0.215
	SRR8316896	Juvenile bud stage	1.125
	SRR8316897	Juvenile bud stage	0.206
	SRR8316894	Third green stage	0.059
	SRR8316900	Third green stage	0.372
	SRR8316901	Third green stage	0.927
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.044
SRP132670	SRR6706286	Control	0.102
	SRR6706287	Light intensity 50%	0.075
	SRR6706288	Light intensity 20%	0.120
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.271
	CNS0095593	Slightly white alabastrum(diploid) 2	0.067
	CNS0095594	Slightly white alabastrum(diploid) 3	1.384
	CNS0095595	Whole white alabastrum(diploid) 2	0.570
	CNS0095596	Whole white alabastrum(diploid) 3	1.068
	CNS0095597	Whole white alabastrum(diploid) 4	1.674
	CNS0095598	Silvery flower (diploied) 1	0.033
	CNS0095599	Silvery flower (diploied) 2	0.539
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.099
	CNS0095602	Golden flower (diploid) 2	0.043
	CNS0095603	Golden flower (diploid) 3	0.278
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.927
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.133
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.044
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.818
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.076
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.543
	CNS0095610	Silvery flower (tetraploid) 1	0.160
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.331
	CNS0095613	Golden flower (tetraploid) 1	0.040
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.118
CRA001975	CRR073297	Stem 1	0.070
	CRR073298	Stem 2	0.352
	CRR073299	Stem 3	0.475
	CRR073300	Leaf 1	0.235
	CRR073301	Leaf 2	0.243
	CRR073302	Leaf 3	0.035
	CRR073303	Juvenile bud 1	0.276
	CRR073304	Juvenile bud 2	0.135
	CRR073305	Juvenile bud 3	0.049
	CRR073306	Third green 1	0.179
	CRR073307	Third green 2	0.097
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.600
	CRR073313	Silver flowering 2	0.213
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.132
	CRR073316	Gold flowering 2	0.273
	CRR073317	Gold flowering 3	0.218
	CRR073318	Tawny withering 1	32.779
	CRR073319	Tawny withering 2	12.294
	CRR073320	Tawny withering 3	34.918