Gene detail

Detail information of GWHGAAZE024169

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010999860.1	0	PREDICTED: endoglucanase 9-like [Populus euphratica]
COG	YP_290232.1	1E-58	endoglucanase
Swissprot	tr\|Q84R49\|GUN10_ORYSJ	4E-150	Endoglucanase 10
trEMBL	tr\|A0A061FQ48\|A0A061FQ48_THECC	0	Endo-1,4-beta-glucanase, putative {ECO:0000313\|EMBL:EOY16644.1}
TAIR10	AT5G49720.1	2E-119	glycosyl hydrolase 9A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	36592626	36596669	+
GWHAAZE00000007	mRNA	36592626	36596669	+
GWHAAZE00000007	exon	36592626	36593013	+
GWHAAZE00000007	exon	36593799	36594109	+
GWHAAZE00000007	exon	36594597	36595070	+
GWHAAZE00000007	exon	36595226	36595358	+
GWHAAZE00000007	exon	36595458	36595630	+
GWHAAZE00000007	exon	36596280	36596669	+
GWHAAZE00000007	CDS	36592626	36593013	+
GWHAAZE00000007	CDS	36593799	36594109	+
GWHAAZE00000007	CDS	36594597	36595070	+
GWHAAZE00000007	CDS	36595226	36595358	+
GWHAAZE00000007	CDS	36595458	36595630	+
GWHAAZE00000007	CDS	36596280	36596669	+

Transcript Sequence
>GWHTAAZE024203 ATGCCTCACTCTCTAGGCTCCCCATCACAAACCTCAGCATCTGATGCAGATTATTTCCCTTCGGTTTCAGTGGGGGGCCGGCTTCTCCCTGCTCCTAGCCGGTGGAATTCAATTGAAGTCGATTTCAATCTTTTCCCACGACCTCAAAATCCACTTGGATATGATTCTCTTCCTTCAAGATTCTCTAAATCTGTCGATTTTAATCTCACTATTACTGATAAAAAGCACTTTAAGCGCTTTATTTACGTCATAAGCTCCGCTTTTCTTCTCATTTCATTTATTCTTCTTCTTTTGCACTTCTTGCCTCACAAACACCACCACCATGGCTCCTCCAAGAATCTCACCCTCGCAATTAGTCAAGCTCTCACGTTCTTTGATGCTCAAAAATCTGGGAATTTACCGAAGAACAATTTGATGAACTTTCGTGGAGATTCAGGATTAAGAGATGGGAACACTAGTAGTACAAATGCAGATCTAGTGGGAGGATTTTATGATTCAGGGAACAATATAAAGTTCAGTTTCCCAACAGCTTATAGCATAAGTGTGTTGAGTTGGACAGTGATTGAATATCATGAGAAATATGATGATATAGGAGAGCTTGATCATGTTAAAGAAATCATCAAATGGGGAAGTGACTACTTGCTCAAGCTCTTTATTCCTCCCAATTCAACTACTGATCCCACCATTTTGTATGCACAGGTGGGTACAGGAAATGGCACAAAAATAGAAAATGACATAAGTTGCTGGGAAAGACCAGAGGATATGAGCTATGAAAGGCCAGTTTCAGTTTGTGGAGCTACAGCTTCAGATTTAGCTGGAGAAATTATTGCTGCATTTTCAGCTGCCTCATTAGTATTTAAAGACAACAAAGAATATTCGCAAAAATTAATAAATTCAGCTGAGAAATTATTCGAAAGTTCGACTAAATCCACCCCTGCTAATAAACAAGGAACGTACACTTTGGATGAAAATTGCGGCGGACCAGCAAGAGAGTTTTATAACTCAACTGGGTACAAAGATGAGCTAGTTTGGGGAGGAATTTGGCTATTTTTTGCCACCGGGAATGATACGTATATTCAATATGCGACTAGTAATTTTGATTCAGCTGCGGAGGAGGAATTGTTTTCCGAGAAGGGGGTTTTTTATTGGAACAACAAGTTCAGTGCTAATGCGATATTGCTAACAAGACTTAGATATTTCCGTGATCTGGGGTACCCATATGAATCTGCATTTGGATCATCAACAAACAGGACTGATTTGCTCATGTGTTCATATCTTTCTAAAGTAGTTTTCAACATGACAGAAGGTGGGTTGATCTTGTTAAAGCCTGATTACGGAGCACCATTGCAATATGCTGCCACAGCATCTTTTCTAACCAAATTGTATGGTGATTTTCTTCATCTTTTGAGAAGATCTGGTAGCAGTTGTGGTTCTGCTGTTTTTACAGTGGAAAATCTAAGGACCTTCTCAAATTCTCAGGTGAATTACATACTTGGAGACAACCCAATGAAGATGAGCTACCTAGTGGGGTATGGAAACCACTACCCAACCCATGTCCACCACAGGGCTGCATCCATCCCTTGGGACAACCAAAAGCACACTTGTGATGAGGGACAAAGATGGCTCAATTCCAAGGACCCAAACCCTAATGTCCTTTTAGGAGCCATGGTTGCTGGGCCTGACCAAAATGACATATTTTTAGATCAAAGGGACAAGCCCTGGTTCACTGAGCCCACCCTAGCCAGCAATGCTGGCCTTGTTGCTGCCCTAATTTCACTTCATGATCCTCCAAGTCACACTTCTGGCTCTAACGGGATGGACAAGTTGGGGATTTTTCAAAATGTACATCTAATTCCTTCATATAATTAA

Network for GWHGAAZE024169

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	117	590	5.90E-110

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.574
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.054
	SRR3591709	Stem	0.548
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.005
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.070
	SRR8316896	Juvenile bud stage	0.041
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.092
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.166
	SRR8316903	Complete white stage	0.055
	SRR8316902	Silver flowering stage	0.001
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.125
	SRR6706287	Light intensity 50%	0.028
	SRR6706288	Light intensity 20%	0.032
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.114
	CNS0095593	Slightly white alabastrum(diploid) 2	0.150
	CNS0095594	Slightly white alabastrum(diploid) 3	0.257
	CNS0095595	Whole white alabastrum(diploid) 2	0.171
	CNS0095596	Whole white alabastrum(diploid) 3	0.022
	CNS0095597	Whole white alabastrum(diploid) 4	0.024
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.095
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.134
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.203
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.169
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.112
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.004
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.112
	CRR073298	Stem 2	0.186
	CRR073299	Stem 3	0.066
	CRR073300	Leaf 1	0.034
	CRR073301	Leaf 2	0.024
	CRR073302	Leaf 3	0.136
	CRR073303	Juvenile bud 1	0.032
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.339
	CRR073319	Tawny withering 2	0.942
	CRR073320	Tawny withering 3	0.541