Detail information of GWHGAAZE024188


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002266510.10PREDICTED: SKP1-interacting partner 15 [Vitis vinifera]
Swissprottr|O49279|SKI15_ARATH2E-156SKP1-interacting partner 15
trEMBLtr|F6GYV4|F6GYV4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB45140.1}
TAIR10AT1G76920.14E-123F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3708699537088910-
GWHAAZE00000007mRNA3708699537088910-
GWHAAZE00000007exon3708699537087420-
GWHAAZE00000007exon3708826037088910-
GWHAAZE00000007CDS3708826037088910-
GWHAAZE00000007CDS3708699537087420-
Transcript Sequence

Network for GWHGAAZE024188

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box5479.70E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.789
SRR3591706second leaf8.589
SRR3591707mature leaf9.101
SRR3591708Shoot apex15.979
SRR3591709Stem24.524
SRR3591710White floral bud58.497
SRR3591711White flower22.524
SRR3591712Green floral bud50.720
SRR3591713Yellow flower22.863
SRP173429 SRR8316895Juvenile bud stage 8.663
SRR8316896Juvenile bud stage 14.779
SRR8316897Juvenile bud stage 8.319
SRR8316894Third green stage 5.510
SRR8316900Third green stage 20.326
SRR8316901Third green stage 20.005
SRR8316898Complete white stage 4.054
SRR8316899Complete white stage 13.302
SRR8316903Complete white stage 6.666
SRR8316902Silver flowering stage7.394
SRR8316904Silver flowering stage7.804
SRR8316905Silver flowering stage4.156
SRR8316906Gold flowering stage 14.911
SRR8316907Gold flowering stage 15.504
SRR8316908Gold flowering stage 16.240
SRP132670SRR6706286Control22.554
SRR6706287Light intensity 50%22.053
SRR6706288Light intensity 20%20.669
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.865
CNS0095593Slightly white alabastrum(diploid) 213.708
CNS0095594Slightly white alabastrum(diploid) 316.092
CNS0095595Whole white alabastrum(diploid) 224.712
CNS0095596Whole white alabastrum(diploid) 326.245
CNS0095597Whole white alabastrum(diploid) 435.533
CNS0095598Silvery flower (diploied) 112.649
CNS0095599Silvery flower (diploied) 212.540
CNS0095600Silvery flower (diploied) 314.528
CNS0095601Golden flower (diploid) 112.562
CNS0095602Golden flower (diploid) 216.134
CNS0095603Golden flower (diploid) 316.068
CNS0095604Slightly white alabastrum(tetraploid) 118.295
CNS0095605Slightly white alabastrum(tetraploid) 222.076
CNS0095606Slightly white alabastrum(tetraploid) 314.250
CNS0095607Whole white alabastrum(tetraploid) 131.272
CNS0095608Whole white alabastrum(tetraploid) 232.929
CNS0095609Whole white alabastrum(tetraploid) 324.438
CNS0095610Silvery flower (tetraploid) 121.737
CNS0095611Silvery flower (tetraploid) 215.625
CNS0095612Silvery flower (tetraploid) 323.170
CNS0095613Golden flower (tetraploid) 115.747
CNS0095614Golden flower (tetraploid) 216.884
CNS0095615Golden flower (tetraploid) 317.333
CRA001975CRR073297Stem 120.570
CRR073298Stem 226.314
CRR073299Stem 320.145
CRR073300Leaf 132.537
CRR073301Leaf 227.744
CRR073302Leaf 318.636
CRR073303Juvenile bud 124.554
CRR073304Juvenile bud 223.822
CRR073305Juvenile bud 320.953
CRR073306Third green 125.799
CRR073307Third green 224.419
CRR073308Third green 327.068
CRR073309Second white 126.022
CRR073310Second white 222.003
CRR073311Second white 321.815
CRR073312Silver flowering 126.268
CRR073313Silver flowering 224.499
CRR073314Silver flowering 329.047
CRR073315Gold flowering 19.081
CRR073316Gold flowering 212.953
CRR073317Gold flowering 311.103
CRR073318Tawny withering 124.123
CRR073319Tawny withering 223.180
CRR073320Tawny withering 318.171