Detail information of GWHGAAZE024189


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008339121.15.6494E-145PREDICTED: SKP1-interacting partner 15 [Malus domestica]
Swissprottr|O49279|SKI15_ARATH4E-129SKP1-interacting partner 15
trEMBLtr|F6GYV4|F6GYV4_VITVI4E-145Putative uncharacterized protein {ECO:0000313|EMBL:CCB45140.1}
TAIR10AT1G76920.11E-94F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3709296637095091-
GWHAAZE00000007mRNA3709296637095091-
GWHAAZE00000007exon3709296637093607-
GWHAAZE00000007exon3709466937095091-
GWHAAZE00000007CDS3709466937095091-
GWHAAZE00000007CDS3709296637093607-
Transcript Sequence

Network for GWHGAAZE024189

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box5491.80E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf49.843
SRR3591706second leaf5.230
SRR3591707mature leaf7.205
SRR3591708Shoot apex29.179
SRR3591709Stem124.721
SRR3591710White floral bud22.049
SRR3591711White flower41.615
SRR3591712Green floral bud7.464
SRR3591713Yellow flower1.881
SRP173429 SRR8316895Juvenile bud stage 43.556
SRR8316896Juvenile bud stage 30.707
SRR8316897Juvenile bud stage 38.457
SRR8316894Third green stage 6.823
SRR8316900Third green stage 3.601
SRR8316901Third green stage 5.610
SRR8316898Complete white stage 0.247
SRR8316899Complete white stage 17.620
SRR8316903Complete white stage 1.276
SRR8316902Silver flowering stage1.663
SRR8316904Silver flowering stage0.557
SRR8316905Silver flowering stage0.241
SRR8316906Gold flowering stage 1.070
SRR8316907Gold flowering stage 0.557
SRR8316908Gold flowering stage 1.290
SRP132670SRR6706286Control5.159
SRR6706287Light intensity 50%5.515
SRR6706288Light intensity 20%3.675
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.613
CNS0095593Slightly white alabastrum(diploid) 210.369
CNS0095594Slightly white alabastrum(diploid) 312.912
CNS0095595Whole white alabastrum(diploid) 29.491
CNS0095596Whole white alabastrum(diploid) 30.804
CNS0095597Whole white alabastrum(diploid) 49.505
CNS0095598Silvery flower (diploied) 141.577
CNS0095599Silvery flower (diploied) 262.015
CNS0095600Silvery flower (diploied) 326.499
CNS0095601Golden flower (diploid) 190.544
CNS0095602Golden flower (diploid) 262.967
CNS0095603Golden flower (diploid) 363.573
CNS0095604Slightly white alabastrum(tetraploid) 12.320
CNS0095605Slightly white alabastrum(tetraploid) 22.716
CNS0095606Slightly white alabastrum(tetraploid) 37.983
CNS0095607Whole white alabastrum(tetraploid) 13.518
CNS0095608Whole white alabastrum(tetraploid) 20.068
CNS0095609Whole white alabastrum(tetraploid) 30.522
CNS0095610Silvery flower (tetraploid) 12.264
CNS0095611Silvery flower (tetraploid) 26.095
CNS0095612Silvery flower (tetraploid) 34.085
CNS0095613Golden flower (tetraploid) 10.664
CNS0095614Golden flower (tetraploid) 21.570
CNS0095615Golden flower (tetraploid) 30.066
CRA001975CRR073297Stem 112.218
CRR073298Stem 29.955
CRR073299Stem 33.591
CRR073300Leaf 13.853
CRR073301Leaf 25.809
CRR073302Leaf 31.194
CRR073303Juvenile bud 11.322
CRR073304Juvenile bud 21.137
CRR073305Juvenile bud 31.935
CRR073306Third green 10.760
CRR073307Third green 20.507
CRR073308Third green 30.683
CRR073309Second white 10.253
CRR073310Second white 20.113
CRR073311Second white 30.354
CRR073312Silver flowering 10.118
CRR073313Silver flowering 20.321
CRR073314Silver flowering 30.203
CRR073315Gold flowering 15.055
CRR073316Gold flowering 27.812
CRR073317Gold flowering 37.451
CRR073318Tawny withering 120.808
CRR073319Tawny withering 248.260
CRR073320Tawny withering 326.294