Gene detail

Detail information of GWHGAAZE024190

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011101473.1	0	PREDICTED: serine decarboxylase-like [Sesamum indicum]
COG	YP_001865119.1	2E-122	histidine decarboxylase
Swissprot	tr\|Q9MA74\|SDC1_ARATH	0	Serine decarboxylase
trEMBL	tr\|A0A061FIJ0\|A0A061FIJ0_THECC	0	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein {ECO:0000313\|EMBL:EOY16688.1}
TAIR10	AT1G43710.1	0	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	37113275	37118983	+
GWHAAZE00000007	mRNA	37113275	37118983	+
GWHAAZE00000007	exon	37113275	37113596	+
GWHAAZE00000007	exon	37116455	37116686	+
GWHAAZE00000007	exon	37116794	37116987	+
GWHAAZE00000007	exon	37117090	37117226	+
GWHAAZE00000007	exon	37118300	37118983	+
GWHAAZE00000007	CDS	37113275	37113596	+
GWHAAZE00000007	CDS	37116455	37116686	+
GWHAAZE00000007	CDS	37116794	37116987	+
GWHAAZE00000007	CDS	37117090	37117226	+
GWHAAZE00000007	CDS	37118300	37118866	+
GWHAAZE00000007	three_prime_UTR	37118867	37118983	+

Transcript Sequence
>GWHTAAZE024224 ATGGTCGGTACAGTAGGAGTGGAATCCATGTCGGTGTTATCCAACGGCAAATCTCAATTGCTGTCCAAGGATTTAGATCCGACGGCCTTGGTGCCGGAGCAGTTGCCGCCGGTGGTGGTTTCTAACGGGGGAAGAGGGGATGTGAATAATAATAATTTGAAAAAGAGAGAGATCGTGTTGGGGAGGAACGTGCATACCACGTGCCTTGAGGTGACGGAGCCCGAGGAGGATGACGAATCGACTGGGGATAAGGAAGCGTATATGGCTAGTGTGTTGGCGAGATACCGGAAGACACTCGTTGAGAGGACTGAGAACCATTTAGGATATCCGTATAACCTAGACTTCGACTATGGCGCTCTCATACAGTTGCAACATTTCTCCATCAATAATCTTGGTGATCCTTTCATTGAGAGTAACTACGGGGTCCATTCAAGACAATTTGAGGTTGGTGTTTTAGATTGGTTCGCTCGTCTATGGGAAATTGAGAAGAATGACTACTGGGGATACATTACAAATTGTGGAACGGAAGGAAATCTTCATGGAATTCTAGTTGGAAGAGAAGTGTTTCCCGATGGAATTATGTACGCATCACAAGAGTCACATTACTCGGTCTTTAAAGCTGCACGAATGTACAGAATGGATTGTATAAAAGTAGGCACTTTAGTCACTGGCGAGATAGATTGTGCAGATTTCAAATCCAAGCTACTTCCTAACAAGAACAAACCGGCCATTATCAATGTCAATATAGGAACAACTGTCAAAGGGGCTGTTGATGATCTTGATCTTGTTATACAGACACTTGAAGAATGTGGATTCTCACACAATCGTTTTTATATACACTGTGATGGTGCTTTATTTGGTCTCATGATGCCGTTTGTCAAACGTGCACCTAAGGTTAGTTTCAAGAAGCCCATTGGAAGTGTGAGCGTCTCGGGACATAAGTTCGTGGGATGTCCAATGCCCTGCGGTGTCCAAATAACAAGGATAGAGCACATTAATGTCCTCTCAAGGAATGTCGAGTACCTTGCTTCAAGGGACGCCACGATCATGGGAAGTCGGAATGGCCATGCTCCAATTTTCCTGTGGTACACCCTTAACAGAAAAGGTTACAAAGGGTTTCGTAAAGAAGTCCAAAAGTGCCTCAAAAATGCTCACTACTTGAAAGACCGCCTTAGAGAAGCAAGGATTAGTGCTATGCTCAATGAGCTGAGCAGCACGGTTGTGTTTGAGCGACCTCAGGATGAGGAATTTGTTCGTCGTTGGCAACTTGCTTGCGAGGGAAATATGGCACATGTTATTGTGATGCCCAATGTCACTATTGAGAAGCTTGATGATTTCCTGAATGAATTAGTTCAAAAAAGATTGATTTGGTATCAAGACGAGAAAGTTCAACCTCCTTGTCTTGCCGCCGATATAGGGAGACAGAACTGTATTTGCATTCTTCATAAGTAAAATCATCACCACAAATTCAGAACCTTTGAGTTCCGTGTTGTTTGTTTGTTGTAGAACCAGAATTTAAGAATTTAACTGGAACGAGATTTATTTGAATTGATTTGTATTGTCCTATAA

Network for GWHGAAZE024190

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00282.20	Pyridoxal_deC	193	406	1.30E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01590	hdc, HDC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Histidine metabolism	map00340

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0016831	molecular_function	carboxy-lyase activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.865
	SRR3591706	second leaf	1.151
	SRR3591707	mature leaf	2.929
	SRR3591708	Shoot apex	3.891
	SRR3591709	Stem	1.627
	SRR3591710	White floral bud	30.074
	SRR3591711	White flower	12.792
	SRR3591712	Green floral bud	40.670
	SRR3591713	Yellow flower	5.105
SRP173429	SRR8316895	Juvenile bud stage	42.929
	SRR8316896	Juvenile bud stage	55.660
	SRR8316897	Juvenile bud stage	48.000
	SRR8316894	Third green stage	7.158
	SRR8316900	Third green stage	30.926
	SRR8316901	Third green stage	49.078
	SRR8316898	Complete white stage	7.703
	SRR8316899	Complete white stage	40.750
	SRR8316903	Complete white stage	12.121
	SRR8316902	Silver flowering stage	2.992
	SRR8316904	Silver flowering stage	4.072
	SRR8316905	Silver flowering stage	1.685
	SRR8316906	Gold flowering stage	3.535
	SRR8316907	Gold flowering stage	3.504
	SRR8316908	Gold flowering stage	3.969
SRP132670	SRR6706286	Control	15.718
	SRR6706287	Light intensity 50%	15.990
	SRR6706288	Light intensity 20%	15.475
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.753
	CNS0095593	Slightly white alabastrum(diploid) 2	64.250
	CNS0095594	Slightly white alabastrum(diploid) 3	68.805
	CNS0095595	Whole white alabastrum(diploid) 2	69.004
	CNS0095596	Whole white alabastrum(diploid) 3	33.205
	CNS0095597	Whole white alabastrum(diploid) 4	45.056
	CNS0095598	Silvery flower (diploied) 1	45.856
	CNS0095599	Silvery flower (diploied) 2	87.384
	CNS0095600	Silvery flower (diploied) 3	29.471
	CNS0095601	Golden flower (diploid) 1	81.859
	CNS0095602	Golden flower (diploid) 2	69.462
	CNS0095603	Golden flower (diploid) 3	63.733
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.159
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.645
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.911
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.435
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.725
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.864
	CNS0095610	Silvery flower (tetraploid) 1	8.067
	CNS0095611	Silvery flower (tetraploid) 2	7.487
	CNS0095612	Silvery flower (tetraploid) 3	9.133
	CNS0095613	Golden flower (tetraploid) 1	2.401
	CNS0095614	Golden flower (tetraploid) 2	3.714
	CNS0095615	Golden flower (tetraploid) 3	0.903
CRA001975	CRR073297	Stem 1	28.272
	CRR073298	Stem 2	30.357
	CRR073299	Stem 3	29.722
	CRR073300	Leaf 1	33.594
	CRR073301	Leaf 2	41.915
	CRR073302	Leaf 3	20.502
	CRR073303	Juvenile bud 1	23.621
	CRR073304	Juvenile bud 2	20.897
	CRR073305	Juvenile bud 3	8.451
	CRR073306	Third green 1	6.275
	CRR073307	Third green 2	6.658
	CRR073308	Third green 3	4.210
	CRR073309	Second white 1	15.225
	CRR073310	Second white 2	13.351
	CRR073311	Second white 3	8.052
	CRR073312	Silver flowering 1	12.315
	CRR073313	Silver flowering 2	12.534
	CRR073314	Silver flowering 3	12.504
	CRR073315	Gold flowering 1	5.355
	CRR073316	Gold flowering 2	10.018
	CRR073317	Gold flowering 3	6.630
	CRR073318	Tawny withering 1	8.424
	CRR073319	Tawny withering 2	26.234
	CRR073320	Tawny withering 3	7.481