Gene detail

Detail information of GWHGAAZE024202

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267914.1	0	PREDICTED: tubby-like F-box protein 8 [Vitis vinifera]
Swissprot	tr\|Q2QXB2\|TLP14_ORYSJ	0	Tubby-like F-box protein 14
trEMBL	tr\|F6GY33\|F6GY33_VITVI	0	Tubby-like F-box protein {ECO:0000256\|RuleBase:RU361125}
TAIR10	AT1G76900.2	8E-159	tubby like protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	37377890	37381290	+
GWHAAZE00000007	mRNA	37377890	37381290	+
GWHAAZE00000007	exon	37377890	37378243	+
GWHAAZE00000007	exon	37378621	37378708	+
GWHAAZE00000007	exon	37379573	37379705	+
GWHAAZE00000007	exon	37380585	37381290	+
GWHAAZE00000007	CDS	37377890	37378243	+
GWHAAZE00000007	CDS	37378621	37378708	+
GWHAAZE00000007	CDS	37379573	37379705	+
GWHAAZE00000007	CDS	37380585	37381290	+

Transcript Sequence
>GWHTAAZE024236 ATGTCATTTCGGAGTATAGTTCGTGATGTAAGGGATGGTTTTGGGAGCTTATCAAGGAGGAGTTTTGAGTTGAGGCTTCCGGGTCATTATAGGGGAAAATCTCAAGGGGCGGTCCATGAATTGCACTACCAGGACCAGCTGCCGGTCATACAGAACAGCTGTTGGGCTAGCCTCCCACCCGAGCTACTACGCGATGTGATTAAGAGGTTGGAGGCAAGTGAGAGCAATTGGCCTGCTCGCAAGCATGTTGTTGCGTGTGCTGCAGTTTGCAGGTCGTGGAGGGAAATGTGCACAGAAATTGTGAGAAATCCGGAGTTCACTGGAAAGATTACATTCCCGGTCTCCCTGAAGCAGCCAGGGGCTCGGGATGGCACCATTCAGTGCTTCATTAAGAGAGACAAAGCCAATTTCACTTATCATCTGTTTCTTTGTCTTAGCCCTGCCTTACTTGTGGAAAATGGGAAATTTCTTCTCTCGGCAAAGCGAAGTAGGAAAACTACGTGTACAGAGTATGTAATCTCGATGGATGCAGATAACATATCAAGGTCGAGCAACACTTACATCGGAAAGCTGAGGTCAAATTTCCTCGGCACAAAGTTCATAATTTACGACACACAACCTCCATACAACCCTCATCTTTCCCCACCAGGCCATACAAGCCGAAGATTCTACTCAAAAAAGGTTTCTCCGAAAGTACCTTCTGGAAGTTTCAACATCGCACAGGTTACATACGAGCTAAATGTGCTAGGCACTCGGGGCCCACGCAGGATGAACTGCGTGATGCACTCGATCCCCACTTCGTCCCTTGAGCCAGGTGGCACCGTCCCAGGACAGCCGGAGCTCCTCCCCAGGTCCCTCGAAGACTCATTTAGAAGCATTTCCTTCTCAAAATCGACGGAATTTAGCAGTTCTCGGTTTTCGGACATTGTGGGCCTGAGCTCACTAGAGGAAGAAGAGGGGGGGAAAGAAAGGCCTTTGGTTCTGAAAAACAAGCCACCTAGGTGGCACGAGCAGTTGCAATGTTGGTGCCTCAATTTCCGGGGAAGGGTGACGGTAGCGTCCGTCAAGAATTTCCAGCTGATAGCCGCCACATGTCCTGCTGGTGCACCTACTCCCTCACAGCAGCAGTCGGGCCAGATGTCGGATCAAGACAAGGTTATTTTGCAGTTTGGGAAAGTTGGAAAGGACATGTTTACTATGGATTATCGGTACCCTCTGTCTGCATTTCAGGCTTTTGCGATATGTTTGAGCAGCTTCGACACAAAATTGGCATGTGAATAA

Network for GWHGAAZE024202

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	54	106	1.70E-10
PF01167.19	Tub	118	421	2.90E-116

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TUB
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	97.550
	SRR3591706	second leaf	44.557
	SRR3591707	mature leaf	44.196
	SRR3591708	Shoot apex	68.353
	SRR3591709	Stem	117.770
	SRR3591710	White floral bud	60.693
	SRR3591711	White flower	75.976
	SRR3591712	Green floral bud	58.621
	SRR3591713	Yellow flower	68.993
SRP173429	SRR8316895	Juvenile bud stage	64.729
	SRR8316896	Juvenile bud stage	69.648
	SRR8316897	Juvenile bud stage	44.511
	SRR8316894	Third green stage	19.170
	SRR8316900	Third green stage	44.510
	SRR8316901	Third green stage	56.239
	SRR8316898	Complete white stage	24.976
	SRR8316899	Complete white stage	97.407
	SRR8316903	Complete white stage	41.761
	SRR8316902	Silver flowering stage	31.349
	SRR8316904	Silver flowering stage	34.246
	SRR8316905	Silver flowering stage	17.596
	SRR8316906	Gold flowering stage	65.861
	SRR8316907	Gold flowering stage	59.745
	SRR8316908	Gold flowering stage	63.553
SRP132670	SRR6706286	Control	51.529
	SRR6706287	Light intensity 50%	53.257
	SRR6706288	Light intensity 20%	53.773
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	60.015
	CNS0095593	Slightly white alabastrum(diploid) 2	67.901
	CNS0095594	Slightly white alabastrum(diploid) 3	60.288
	CNS0095595	Whole white alabastrum(diploid) 2	52.668
	CNS0095596	Whole white alabastrum(diploid) 3	33.867
	CNS0095597	Whole white alabastrum(diploid) 4	40.896
	CNS0095598	Silvery flower (diploied) 1	86.921
	CNS0095599	Silvery flower (diploied) 2	80.874
	CNS0095600	Silvery flower (diploied) 3	97.279
	CNS0095601	Golden flower (diploid) 1	87.816
	CNS0095602	Golden flower (diploid) 2	128.986
	CNS0095603	Golden flower (diploid) 3	120.818
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.903
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.716
	CNS0095606	Slightly white alabastrum(tetraploid) 3	70.249
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.166
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.148
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.277
	CNS0095610	Silvery flower (tetraploid) 1	55.362
	CNS0095611	Silvery flower (tetraploid) 2	53.136
	CNS0095612	Silvery flower (tetraploid) 3	57.638
	CNS0095613	Golden flower (tetraploid) 1	43.820
	CNS0095614	Golden flower (tetraploid) 2	54.683
	CNS0095615	Golden flower (tetraploid) 3	67.228
CRA001975	CRR073297	Stem 1	65.097
	CRR073298	Stem 2	60.535
	CRR073299	Stem 3	64.423
	CRR073300	Leaf 1	64.082
	CRR073301	Leaf 2	65.760
	CRR073302	Leaf 3	62.381
	CRR073303	Juvenile bud 1	58.915
	CRR073304	Juvenile bud 2	47.653
	CRR073305	Juvenile bud 3	67.539
	CRR073306	Third green 1	61.905
	CRR073307	Third green 2	66.189
	CRR073308	Third green 3	63.036
	CRR073309	Second white 1	63.816
	CRR073310	Second white 2	60.220
	CRR073311	Second white 3	62.858
	CRR073312	Silver flowering 1	72.523
	CRR073313	Silver flowering 2	73.479
	CRR073314	Silver flowering 3	74.430
	CRR073315	Gold flowering 1	48.772
	CRR073316	Gold flowering 2	86.765
	CRR073317	Gold flowering 3	62.062
	CRR073318	Tawny withering 1	158.992
	CRR073319	Tawny withering 2	158.848
	CRR073320	Tawny withering 3	173.262