Gene detail

Detail information of GWHGAAZE024212

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010665141.1	0	PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q3ECY6\|SDG41_ARATH	8E-113	Protein SET DOMAIN GROUP 41
trEMBL	tr\|A0A061FI80\|A0A061FI80_THECC	3E-174	SET domain protein, putative isoform 1 {ECO:0000313\|EMBL:EOY16761.1}
TAIR10	AT1G43245.1	5E-87	SET domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	37608489	37612757	-
GWHAAZE00000007	mRNA	37608489	37612757	-
GWHAAZE00000007	exon	37608489	37609484	-
GWHAAZE00000007	exon	37610121	37610219	-
GWHAAZE00000007	exon	37611249	37611349	-
GWHAAZE00000007	exon	37611459	37611672	-
GWHAAZE00000007	exon	37612206	37612757	-
GWHAAZE00000007	CDS	37612206	37612757	-
GWHAAZE00000007	CDS	37611459	37611672	-
GWHAAZE00000007	CDS	37611249	37611349	-
GWHAAZE00000007	CDS	37610121	37610219	-
GWHAAZE00000007	CDS	37608489	37609484	-

Transcript Sequence
>GWHTAAZE024246 ATGGAGATGAGAGCAGGTGAAGAAGATGACATAGACATTGGCCAAGACCTCACTCCCCCTCTCTCTCCTCTAGCTTTCTCTCTCTACAACTCCTCTCTCCTCTCTCACTGCTCCTCATGCTCCTCCCCTCTCCCCCCAAACCCCCACCCCCACCACCACCTCCCCTCCCTCCTCTACTGCTCCCTTAAATGCTCCTCCACCTCCAACCCCCACCTCTCCGCCGCCGAGCACCACCTCCTCCACACCCAACCACACCACCTCTCCGACACCTCCGACCTCCGCGCCTCACTCCGCCTCCTCTTCAGCTTCGACGCCGACATTTCCGGATTTGGTGGCTTTCCTGCCAGGATCCGAGGATTGTTGACCAATCGCGAGAAACTGATAAGGATTGCTGGAAACGATGGCGTTAAGGAGAGGATTAGGGATGGGGGGAAGGCGATTGCGGTGGCGAGGAGGATGAGTGAGGGTTTGGATTTGGATGGAGGGGAAGGGAATTGTGTTGTGGAAGAGGCGGTTCTGTGCGCTGTGCTAACCAACGCCGTGGAAGTTCAGGTGAAGGGGGGAGGCAGCATTGGAATTGCTGTGTATGGTACAGATTTCTCATGGATCAATCACAGCTGCTCTCCCAATGCTTGTTACCGGTTTTTGCCACCAGAGTTTTCTGGAGGTGAGTCACGGTTGCGGATAACTCCGGTTGCGACTGCCGGTGGTGGTGGAATTGAATTGGTAGATAATGGTGATTGTAATAAAGACAAGACAACAAATGAATGCAAGGGCTATGGTCCGAGAGTAGTTGTTCGGAGTATCAAGGCAATTAAGAAGGGTGAGGAGGTATCAATTGCATACACTGACTTGTTACAGCCTAAGGCACTTAGACAGTCGGAGTTATGGTTAAAGTATCGGTTTATATGCTGCTGTAGGCGATGTAGTGCGTTGCCTCCATGTTATGTGGATCTTGCGTTGCAATTAATCGTCAACACTTATGGCAGTTTTTTCATCCAGGAAGAATCAGTTGTCAATCTCGATTCCACAAACCCAAGTTATGATCAAAACTTCTACAGAGAGAAGGAAATAGAAAAGCTCACTGATCACATAGAAGATGCTATTAGCGACTATCTGTCATTTAACAACGCCGAATCATGCTGTGAAAAGCTTGAGAATGCACTGACTCATGGCCTCCTTAAGGAAGAAAACTTGCAGCAAAAGATTAGGTTGCACCCTCTTCACCATCTCTCTCTAAATACCTACACAACACTTGCTTCGGCATATAAAGTCCGTGGAACTGAGTTATTGGATCTTAATCCCGAGTCTGACAATGATGAAGATTATATGCGTGCTTTCGATATGAACCGAATCAGTTCCGCATACTCATTCTTACTTGCAGGTGCAACCCACCATCTTTTTTTGTCCGAATCTTCTCTTATTGCATCTGCTGCGAATTATTGGACCTATGCTGGGGAGTCTTTAATAAATCTTGCTAGAAGCACAATTTGGAATTTTGTTCTAAAACGACAATCCCCAGTTACCGACTTTTCACCATTTCAAAGTCCTAAAAGCTGTGATTGTGTATTGATGGCGATGTTTGAGGCAGATTTTGTTAGCAGTCAATCTCGAAACACTGAGTTTGAGGACATATCCAGAGAGTTTCTTCACTGTATAAAAAATATAACTCCAAATGTATGGTCCTTTCTGGTTAGCAGCAATTGCTACTTGCGAACAATTAAAGACCCTCTTGATTTTAGTTGGCTCCGAACCAAGAAATCAGTGAATATATCAGAACTACTTAAAGGTAATTTAGACAGCAGCAAAGAAGAGGGATTTGCTGACCAAGAGAGGATGGATATCTTTCGCCTTGGCGTCCATTGCTTACTGTACAGCGGGTTCTCGTCGAGAATTTGTTGGGGCAAGGATTCCTATTTGACTTGTTCTATTCAAAGTGTTTTAAATGGTGGACGTACCTGA

Network for GWHGAAZE024212

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	190	282	9.70E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
K11426	SMYD	Metabolic pathways	map01100
K11426	SMYD	Lysine degradation	map00310

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.200
	SRR3591706	second leaf	6.071
	SRR3591707	mature leaf	3.993
	SRR3591708	Shoot apex	10.636
	SRR3591709	Stem	5.805
	SRR3591710	White floral bud	4.484
	SRR3591711	White flower	3.636
	SRR3591712	Green floral bud	6.248
	SRR3591713	Yellow flower	1.722
SRP173429	SRR8316895	Juvenile bud stage	4.595
	SRR8316896	Juvenile bud stage	7.299
	SRR8316897	Juvenile bud stage	4.006
	SRR8316894	Third green stage	3.354
	SRR8316900	Third green stage	8.169
	SRR8316901	Third green stage	7.017
	SRR8316898	Complete white stage	1.474
	SRR8316899	Complete white stage	7.425
	SRR8316903	Complete white stage	3.923
	SRR8316902	Silver flowering stage	1.108
	SRR8316904	Silver flowering stage	1.616
	SRR8316905	Silver flowering stage	0.719
	SRR8316906	Gold flowering stage	1.966
	SRR8316907	Gold flowering stage	1.833
	SRR8316908	Gold flowering stage	2.237
SRP132670	SRR6706286	Control	5.659
	SRR6706287	Light intensity 50%	5.628
	SRR6706288	Light intensity 20%	6.286
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.716
	CNS0095593	Slightly white alabastrum(diploid) 2	6.963
	CNS0095594	Slightly white alabastrum(diploid) 3	7.942
	CNS0095595	Whole white alabastrum(diploid) 2	9.742
	CNS0095596	Whole white alabastrum(diploid) 3	11.198
	CNS0095597	Whole white alabastrum(diploid) 4	13.337
	CNS0095598	Silvery flower (diploied) 1	4.927
	CNS0095599	Silvery flower (diploied) 2	3.857
	CNS0095600	Silvery flower (diploied) 3	4.529
	CNS0095601	Golden flower (diploid) 1	4.664
	CNS0095602	Golden flower (diploid) 2	5.057
	CNS0095603	Golden flower (diploid) 3	4.293
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.941
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.764
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.720
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.842
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.758
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.177
	CNS0095610	Silvery flower (tetraploid) 1	4.672
	CNS0095611	Silvery flower (tetraploid) 2	5.682
	CNS0095612	Silvery flower (tetraploid) 3	5.893
	CNS0095613	Golden flower (tetraploid) 1	1.996
	CNS0095614	Golden flower (tetraploid) 2	3.837
	CNS0095615	Golden flower (tetraploid) 3	3.195
CRA001975	CRR073297	Stem 1	5.275
	CRR073298	Stem 2	5.390
	CRR073299	Stem 3	4.792
	CRR073300	Leaf 1	6.653
	CRR073301	Leaf 2	4.712
	CRR073302	Leaf 3	4.603
	CRR073303	Juvenile bud 1	2.463
	CRR073304	Juvenile bud 2	2.226
	CRR073305	Juvenile bud 3	3.385
	CRR073306	Third green 1	1.327
	CRR073307	Third green 2	0.884
	CRR073308	Third green 3	0.723
	CRR073309	Second white 1	1.029
	CRR073310	Second white 2	0.496
	CRR073311	Second white 3	0.704
	CRR073312	Silver flowering 1	0.090
	CRR073313	Silver flowering 2	0.173
	CRR073314	Silver flowering 3	0.328
	CRR073315	Gold flowering 1	2.495
	CRR073316	Gold flowering 2	3.056
	CRR073317	Gold flowering 3	1.829
	CRR073318	Tawny withering 1	2.439
	CRR073319	Tawny withering 2	2.211
	CRR073320	Tawny withering 3	4.258