Gene detail

Detail information of GWHGAAZE024215

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006377718.1	2.67613E-36	hypothetical protein POPTR_0011s10520g [Populus trichocarpa]
Swissprot	tr\|Q9FNJ5\|FDL31_ARATH	1E-12	F-box/FBD/LRR-repeat protein At5g22660
trEMBL	tr\|B9N7R6\|B9N7R6_POPTR	1E-36	Uncharacterized protein {ECO:0000313\|EMBL:ERP55515.1}
TAIR10	AT5G22660.2	6E-12	FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	37638611	37640965	+
GWHAAZE00000007	mRNA	37638611	37640965	+
GWHAAZE00000007	exon	37638611	37639068	+
GWHAAZE00000007	exon	37639155	37639611	+
GWHAAZE00000007	exon	37640316	37640495	+
GWHAAZE00000007	exon	37640942	37640965	+
GWHAAZE00000007	CDS	37638611	37639068	+
GWHAAZE00000007	CDS	37639155	37639611	+
GWHAAZE00000007	CDS	37640316	37640495	+
GWHAAZE00000007	CDS	37640942	37640965	+

Transcript Sequence
>GWHTAAZE024249 ATGAGCAGTAACAAGAATTTGCGGTCAACCATAGAGGATGAAGACAGAATCAGCAGTTTGCCTGACCACATTCTGCACTGCATTCTTCGTAAACTAGAGGCCAAACATGCAGCCCAAACCTGTATTCTCTCAAAAAGATGGCTATACGTGTGGAAAAAACTCCACATTCTCAAATTCAGATACCCAAATCACCAGTTAGGGAATAACCCTGAAGACACAACCTCCTCTTTCACTAAATCCGTGTCACGTTTTCTGAATAACCGTGATGCATTTACCGATATTCACACTTTACAATTTGTGGCTCCTTATTCTGTTGATCCGAAGTACCTGAAAAAATTCATTCGCTATGCATTTCACCACAACGTTAAGTTTTTGAGTATGACTTCTCTTTATACAAATGTGCCTCTAACTGCGATCCAGGAAAACATAGAGAGACTCAAGACCGTTGCAGCCTCTGGGCTGCCGGAATCACTTAATTTACCGGCACTAGAAGTAATACAGCTAGAATGGTTTTCCTTGTCGAAATCTAACCAGTATACCTTCTCAAGCTGTCCGAACCTTAGACATTTGTATTTGTACTACTGCACTATACCCAATGATCTTGAGGTTCTCAACATTTGCGGTCCCAAGCTTCAGAACATAAAGTTCTTGTATCTCCACAGGTTGAGATACCTCTCTCCATCCCACATTAAAGTTGCAATTGATGCACCAAGCCTTGTGTCTTTTAGCTTCAGAGGGTCGAATCCAATGGATTTTGTCATGAGTGAGCTTCCTTGTCTAGATGTGTTCAGGATTGAACTAAATGTGCAGTTTCATAGAGATATATATAAGCGGGGGTTTGTAATACTTCTGATCAAGATGCTTAGGCAGCTATGCAATGCGAAATCAGCTAGACTGACCTTGAGGATCCTTGAGGTGCTCTCTCTAGCTCCTGATTTATTGGTAGATCCCCACCCTCCATTCTGTAATTTGAAGAGTTTAAGGTTAAGATCTTGTGGGAAGTGCAAGGAAATAACGCCAGCTATGCAGGATGTGTTGAATTATTTGCTTAAGAAATCTCCCAATGCCAAAATTGAAATGGAAGAACTCCCAAAGGCACAATCTAGCAAAGAAGCATAA

Network for GWHGAAZE024215

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	16	55	0.00012

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.175
	SRR3591706	second leaf	9.812
	SRR3591707	mature leaf	13.529
	SRR3591708	Shoot apex	13.420
	SRR3591709	Stem	13.684
	SRR3591710	White floral bud	8.052
	SRR3591711	White flower	10.326
	SRR3591712	Green floral bud	11.626
	SRR3591713	Yellow flower	3.273
SRP173429	SRR8316895	Juvenile bud stage	11.266
	SRR8316896	Juvenile bud stage	14.911
	SRR8316897	Juvenile bud stage	6.936
	SRR8316894	Third green stage	4.945
	SRR8316900	Third green stage	13.115
	SRR8316901	Third green stage	11.515
	SRR8316898	Complete white stage	3.004
	SRR8316899	Complete white stage	15.139
	SRR8316903	Complete white stage	4.004
	SRR8316902	Silver flowering stage	1.575
	SRR8316904	Silver flowering stage	3.359
	SRR8316905	Silver flowering stage	0.481
	SRR8316906	Gold flowering stage	2.804
	SRR8316907	Gold flowering stage	4.226
	SRR8316908	Gold flowering stage	5.976
SRP132670	SRR6706286	Control	9.527
	SRR6706287	Light intensity 50%	7.951
	SRR6706288	Light intensity 20%	8.987
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.901
	CNS0095593	Slightly white alabastrum(diploid) 2	12.165
	CNS0095594	Slightly white alabastrum(diploid) 3	15.421
	CNS0095595	Whole white alabastrum(diploid) 2	8.818
	CNS0095596	Whole white alabastrum(diploid) 3	7.205
	CNS0095597	Whole white alabastrum(diploid) 4	5.186
	CNS0095598	Silvery flower (diploied) 1	9.512
	CNS0095599	Silvery flower (diploied) 2	11.156
	CNS0095600	Silvery flower (diploied) 3	7.022
	CNS0095601	Golden flower (diploid) 1	6.585
	CNS0095602	Golden flower (diploid) 2	7.933
	CNS0095603	Golden flower (diploid) 3	8.690
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.902
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.497
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.412
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.632
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.174
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.306
	CNS0095610	Silvery flower (tetraploid) 1	8.157
	CNS0095611	Silvery flower (tetraploid) 2	11.738
	CNS0095612	Silvery flower (tetraploid) 3	4.733
	CNS0095613	Golden flower (tetraploid) 1	3.247
	CNS0095614	Golden flower (tetraploid) 2	6.774
	CNS0095615	Golden flower (tetraploid) 3	3.470
CRA001975	CRR073297	Stem 1	10.502
	CRR073298	Stem 2	9.448
	CRR073299	Stem 3	7.838
	CRR073300	Leaf 1	7.941
	CRR073301	Leaf 2	6.441
	CRR073302	Leaf 3	6.670
	CRR073303	Juvenile bud 1	6.371
	CRR073304	Juvenile bud 2	3.064
	CRR073305	Juvenile bud 3	7.369
	CRR073306	Third green 1	0.191
	CRR073307	Third green 2	0.246
	CRR073308	Third green 3	0.644
	CRR073309	Second white 1	1.539
	CRR073310	Second white 2	0.591
	CRR073311	Second white 3	0.624
	CRR073312	Silver flowering 1	0.686
	CRR073313	Silver flowering 2	0.179
	CRR073314	Silver flowering 3	0.601
	CRR073315	Gold flowering 1	5.104
	CRR073316	Gold flowering 2	7.394
	CRR073317	Gold flowering 3	5.037
	CRR073318	Tawny withering 1	6.126
	CRR073319	Tawny withering 2	8.157
	CRR073320	Tawny withering 3	9.246