Gene detail

Detail information of GWHGAAZE024232

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004290489.1	0	PREDICTED: peroxidase 12-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q96520\|PER12_ARATH	5E-155	Peroxidase 12 (Precursor)
trEMBL	tr\|M5W6X8\|M5W6X8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ02565.1}
TAIR10	AT1G71695.1	5E-116	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38191120	38196095	+
GWHAAZE00000007	mRNA	38191120	38196095	+
GWHAAZE00000007	exon	38191120	38191374	+
GWHAAZE00000007	exon	38193115	38193309	+
GWHAAZE00000007	exon	38195351	38196095	+
GWHAAZE00000007	CDS	38191120	38191374	+
GWHAAZE00000007	CDS	38193115	38193309	+
GWHAAZE00000007	CDS	38195351	38195983	+
GWHAAZE00000007	three_prime_UTR	38195984	38196095	+

Transcript Sequence
>GWHTAAZE024266 ATGGCTTCTTTTTCATCTCTAGTAATATTGTTCGTAGCCATCTCTTCACTTCTTGCTATTTCTTATTCATCTTATGCCCCGGAGGAGGTTCGGAGTTCGGTGCCTTTGGTGAAGGGACTTTCATGGAATTTCCACAGTTCAAAGTGCCCTCGAGTGGAAATTATTATTAGGCAACACCTAAAGAAGGTGTTCAAGAATGATATTGGCCAAGCTGCTGGCTTGCTTCGCCTTCATTTCCATGACTGCTTTGTTCAGGGATGCGATGGATCCGTGTTGCTTGATGGATCGGCAAGTGGGCCGAGTGAGCAGGAAGCACCCCCTAATTTGAGTCTAAGAGCTACTGCGTTTCAGATCATCGATGACCTTCGAGAAATTGTCCACAAAGAATGTGGTAGGGTTGTTTCTTGTGCTGATATTGCTGCACTTGCTGCTCGCGACGCTGTTTTCTTGTCAGGGGGACCGGACTATGATGTTCCTTTGGGAAGACGAGACGGACTTAACTTTGCGACAAGAAACCAAACTCTAGATAACCTACCCCCTCCAACAAGCAACACAACCTTCCTTCTAACCTCTCTTGCGCGTAAGAACCTCGACCCCACGGACGTGGTAGCCCTCTCCGGTGGTCATACTATCGGCATCAGTCACTGCAACTCCTTTACACCTCGTTTGTACCCCACCCAAGACCCCACCATGGAGAAGACTCTTGCTGCTGACCTCAAAGTCGTCTGTCCCACAAACACCACCAACAAAACTACCTTTATGGACATTAGATCTCCGAACGAATTTGACAACAAGTATTATGTCAATCTTGTGAATCGACAAGGGCTTTTTACTTCGGACCAAGATTTGTACACTGACGAGAGGACTCGAGACATTGTTAAGAGCTTTGCTGATGATCAAGAGCTGTTCTTTGAGAAGTTTGTGCGTGGTATGATTAAAATGGGACAATTGAGCGTGTTAACCGGCCGGAGAGGGGAAATTAGGGCAAACTGCTCGGTGAGAAATTCGGAGAATGAATCGTACTTGAAGGAGGTGGTGGATGTGGATGTGGATGAAGAGTCAAGGTCTGAGTTACGAAAATAGAAGTGGTAGTAGTTAAGGTTTTATTTGCGTGCAATTTGGTTTTATTGTATTTATCTACTCCTTTGTTGCAATTTAAGTTTGGAACTTATCAAAATTAAGTCTCTTGTTATGT

Network for GWHGAAZE024232

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0233

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	57	299	2.70E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	282.845
	SRR3591706	second leaf	373.400
	SRR3591707	mature leaf	861.910
	SRR3591708	Shoot apex	180.835
	SRR3591709	Stem	899.745
	SRR3591710	White floral bud	219.382
	SRR3591711	White flower	574.382
	SRR3591712	Green floral bud	97.343
	SRR3591713	Yellow flower	460.937
SRP173429	SRR8316895	Juvenile bud stage	76.547
	SRR8316896	Juvenile bud stage	77.109
	SRR8316897	Juvenile bud stage	33.193
	SRR8316894	Third green stage	29.751
	SRR8316900	Third green stage	35.707
	SRR8316901	Third green stage	38.933
	SRR8316898	Complete white stage	27.730
	SRR8316899	Complete white stage	146.032
	SRR8316903	Complete white stage	52.927
	SRR8316902	Silver flowering stage	24.433
	SRR8316904	Silver flowering stage	35.023
	SRR8316905	Silver flowering stage	14.808
	SRR8316906	Gold flowering stage	66.976
	SRR8316907	Gold flowering stage	68.930
	SRR8316908	Gold flowering stage	110.900
SRP132670	SRR6706286	Control	173.340
	SRR6706287	Light intensity 50%	82.579
	SRR6706288	Light intensity 20%	55.916
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	145.747
	CNS0095593	Slightly white alabastrum(diploid) 2	64.981
	CNS0095594	Slightly white alabastrum(diploid) 3	95.822
	CNS0095595	Whole white alabastrum(diploid) 2	47.650
	CNS0095596	Whole white alabastrum(diploid) 3	21.217
	CNS0095597	Whole white alabastrum(diploid) 4	51.415
	CNS0095598	Silvery flower (diploied) 1	337.062
	CNS0095599	Silvery flower (diploied) 2	285.396
	CNS0095600	Silvery flower (diploied) 3	133.107
	CNS0095601	Golden flower (diploid) 1	364.914
	CNS0095602	Golden flower (diploid) 2	334.116
	CNS0095603	Golden flower (diploid) 3	328.593
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.199
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.702
	CNS0095606	Slightly white alabastrum(tetraploid) 3	84.152
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.571
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.991
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.460
	CNS0095610	Silvery flower (tetraploid) 1	117.093
	CNS0095611	Silvery flower (tetraploid) 2	160.197
	CNS0095612	Silvery flower (tetraploid) 3	112.633
	CNS0095613	Golden flower (tetraploid) 1	106.749
	CNS0095614	Golden flower (tetraploid) 2	168.582
	CNS0095615	Golden flower (tetraploid) 3	76.962
CRA001975	CRR073297	Stem 1	147.392
	CRR073298	Stem 2	108.226
	CRR073299	Stem 3	111.472
	CRR073300	Leaf 1	36.054
	CRR073301	Leaf 2	71.469
	CRR073302	Leaf 3	37.900
	CRR073303	Juvenile bud 1	22.611
	CRR073304	Juvenile bud 2	18.224
	CRR073305	Juvenile bud 3	56.329
	CRR073306	Third green 1	17.074
	CRR073307	Third green 2	17.554
	CRR073308	Third green 3	20.463
	CRR073309	Second white 1	58.451
	CRR073310	Second white 2	35.514
	CRR073311	Second white 3	35.433
	CRR073312	Silver flowering 1	123.026
	CRR073313	Silver flowering 2	155.585
	CRR073314	Silver flowering 3	186.727
	CRR073315	Gold flowering 1	166.448
	CRR073316	Gold flowering 2	250.683
	CRR073317	Gold flowering 3	345.421
	CRR073318	Tawny withering 1	262.852
	CRR073319	Tawny withering 2	323.326
	CRR073320	Tawny withering 3	184.075