Detail information of GWHGAAZE024243


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011100620.10PREDICTED: probable choline kinase 1 [Sesamum indicum]
COGYP_002527202.12E-11choline/ethanolamine kinase
Swissprottr|Q9SZ92|CK3_ARATH1E-166Probable choline kinase 3
trEMBLtr|K4BTI9|K4BTI9_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g072020.2.1}
TAIR10AT1G71697.12E-129choline kinase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3848520038489972-
GWHAAZE00000007mRNA3848520038489972-
GWHAAZE00000007exon3848962538489972-
GWHAAZE00000007exon3848846938488590-
GWHAAZE00000007exon3848819138488386-
GWHAAZE00000007exon3848642038486537-
GWHAAZE00000007exon3848628738486334-
GWHAAZE00000007exon3848547938485579-
GWHAAZE00000007exon3848520038485383-
GWHAAZE00000007CDS3848962538489972-
GWHAAZE00000007CDS3848846938488590-
GWHAAZE00000007CDS3848819138488386-
GWHAAZE00000007CDS3848642038486537-
GWHAAZE00000007CDS3848628738486334-
GWHAAZE00000007CDS3848547938485579-
GWHAAZE00000007CDS3848526738485383-
GWHAAZE00000007three_prime_UTR3848520038485266-
Transcript Sequence

Network for GWHGAAZE024243

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01633.21Choline_kinase642641.50E-66
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14156CHK Metabolic pathways map01100
Glycerophospholipid metabolismmap00564

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf53.371
SRR3591706second leaf14.736
SRR3591707mature leaf36.705
SRR3591708Shoot apex10.222
SRR3591709Stem62.529
SRR3591710White floral bud40.438
SRR3591711White flower51.755
SRR3591712Green floral bud16.668
SRR3591713Yellow flower90.334
SRP173429 SRR8316895Juvenile bud stage 24.692
SRR8316896Juvenile bud stage 46.788
SRR8316897Juvenile bud stage 31.168
SRR8316894Third green stage 8.235
SRR8316900Third green stage 20.910
SRR8316901Third green stage 22.553
SRR8316898Complete white stage 10.407
SRR8316899Complete white stage 42.628
SRR8316903Complete white stage 9.130
SRR8316902Silver flowering stage29.829
SRR8316904Silver flowering stage54.499
SRR8316905Silver flowering stage23.610
SRR8316906Gold flowering stage 54.755
SRR8316907Gold flowering stage 63.752
SRR8316908Gold flowering stage 68.364
SRP132670SRR6706286Control9.380
SRR6706287Light intensity 50%12.091
SRR6706288Light intensity 20%12.429
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.476
CNS0095593Slightly white alabastrum(diploid) 246.550
CNS0095594Slightly white alabastrum(diploid) 340.145
CNS0095595Whole white alabastrum(diploid) 238.969
CNS0095596Whole white alabastrum(diploid) 310.152
CNS0095597Whole white alabastrum(diploid) 418.759
CNS0095598Silvery flower (diploied) 138.405
CNS0095599Silvery flower (diploied) 232.823
CNS0095600Silvery flower (diploied) 340.876
CNS0095601Golden flower (diploid) 129.416
CNS0095602Golden flower (diploid) 266.678
CNS0095603Golden flower (diploid) 366.153
CNS0095604Slightly white alabastrum(tetraploid) 112.117
CNS0095605Slightly white alabastrum(tetraploid) 28.335
CNS0095606Slightly white alabastrum(tetraploid) 320.718
CNS0095607Whole white alabastrum(tetraploid) 19.383
CNS0095608Whole white alabastrum(tetraploid) 210.195
CNS0095609Whole white alabastrum(tetraploid) 320.204
CNS0095610Silvery flower (tetraploid) 160.390
CNS0095611Silvery flower (tetraploid) 229.774
CNS0095612Silvery flower (tetraploid) 347.901
CNS0095613Golden flower (tetraploid) 137.558
CNS0095614Golden flower (tetraploid) 256.374
CNS0095615Golden flower (tetraploid) 374.880
CRA001975CRR073297Stem 124.387
CRR073298Stem 222.950
CRR073299Stem 317.206
CRR073300Leaf 136.129
CRR073301Leaf 231.133
CRR073302Leaf 329.935
CRR073303Juvenile bud 122.856
CRR073304Juvenile bud 25.744
CRR073305Juvenile bud 316.653
CRR073306Third green 149.888
CRR073307Third green 249.983
CRR073308Third green 346.369
CRR073309Second white 159.002
CRR073310Second white 245.003
CRR073311Second white 336.692
CRR073312Silver flowering 160.561
CRR073313Silver flowering 275.050
CRR073314Silver flowering 375.414
CRR073315Gold flowering 117.470
CRR073316Gold flowering 245.060
CRR073317Gold flowering 322.588
CRR073318Tawny withering 145.606
CRR073319Tawny withering 268.201
CRR073320Tawny withering 318.193