Detail information of GWHGAAZE024252


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI29360.30unnamed protein product [Vitis vinifera]
COGYP_003157337.19E-12RNP-1 like RNA-binding protein
Swissprottr|Q05196|PABP5_ARATH0Polyadenylate-binding protein 5
trEMBLtr|F6HJE0|F6HJE0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB52339.1}
TAIR10AT1G71770.22E-176poly(A)-binding protein 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3862333238628702-
GWHAAZE00000007mRNA3862333238628702-
GWHAAZE00000007exon3862333238623556-
GWHAAZE00000007exon3862421338624437-
GWHAAZE00000007exon3862528238625581-
GWHAAZE00000007exon3862614638626181-
GWHAAZE00000007exon3862751238627601-
GWHAAZE00000007exon3862774438627821-
GWHAAZE00000007exon3862791438628702-
GWHAAZE00000007CDS3862791438628702-
GWHAAZE00000007CDS3862774438627821-
GWHAAZE00000007CDS3862751238627601-
GWHAAZE00000007CDS3862614638626181-
GWHAAZE00000007CDS3862528238625581-
GWHAAZE00000007CDS3862421338624437-
GWHAAZE00000007CDS3862333238623556-
Transcript Sequence

Network for GWHGAAZE024252

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_1411091.60E-19
PF00076.23RRM_11321973.40E-21
PF00076.23RRM_12353038.50E-20
PF00658.19PABP4945601.30E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13126PABPC RNA transport map03013
mRNA surveillance pathwaymap03015
RNA degradationmap03018

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.584
SRR3591706second leaf5.335
SRR3591707mature leaf0.477
SRR3591708Shoot apex8.772
SRR3591709Stem9.684
SRR3591710White floral bud5.600
SRR3591711White flower3.388
SRR3591712Green floral bud8.685
SRR3591713Yellow flower3.867
SRP173429 SRR8316895Juvenile bud stage 12.196
SRR8316896Juvenile bud stage 21.218
SRR8316897Juvenile bud stage 8.187
SRR8316894Third green stage 3.897
SRR8316900Third green stage 5.808
SRR8316901Third green stage 5.848
SRR8316898Complete white stage 0.786
SRR8316899Complete white stage 2.923
SRR8316903Complete white stage 1.271
SRR8316902Silver flowering stage0.580
SRR8316904Silver flowering stage0.488
SRR8316905Silver flowering stage0.293
SRR8316906Gold flowering stage 0.716
SRR8316907Gold flowering stage 0.999
SRR8316908Gold flowering stage 1.593
SRP132670SRR6706286Control4.085
SRR6706287Light intensity 50%4.826
SRR6706288Light intensity 20%5.663
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.398
CNS0095593Slightly white alabastrum(diploid) 27.213
CNS0095594Slightly white alabastrum(diploid) 316.334
CNS0095595Whole white alabastrum(diploid) 23.915
CNS0095596Whole white alabastrum(diploid) 33.972
CNS0095597Whole white alabastrum(diploid) 43.792
CNS0095598Silvery flower (diploied) 11.821
CNS0095599Silvery flower (diploied) 21.159
CNS0095600Silvery flower (diploied) 30.996
CNS0095601Golden flower (diploid) 10.907
CNS0095602Golden flower (diploid) 21.586
CNS0095603Golden flower (diploid) 31.313
CNS0095604Slightly white alabastrum(tetraploid) 112.147
CNS0095605Slightly white alabastrum(tetraploid) 29.084
CNS0095606Slightly white alabastrum(tetraploid) 313.339
CNS0095607Whole white alabastrum(tetraploid) 15.394
CNS0095608Whole white alabastrum(tetraploid) 23.708
CNS0095609Whole white alabastrum(tetraploid) 36.292
CNS0095610Silvery flower (tetraploid) 11.613
CNS0095611Silvery flower (tetraploid) 20.983
CNS0095612Silvery flower (tetraploid) 31.139
CNS0095613Golden flower (tetraploid) 10.853
CNS0095614Golden flower (tetraploid) 21.562
CNS0095615Golden flower (tetraploid) 30.666
CRA001975CRR073297Stem 119.156
CRR073298Stem 214.176
CRR073299Stem 316.972
CRR073300Leaf 16.680
CRR073301Leaf 29.136
CRR073302Leaf 36.324
CRR073303Juvenile bud 17.668
CRR073304Juvenile bud 24.088
CRR073305Juvenile bud 310.004
CRR073306Third green 10.822
CRR073307Third green 20.856
CRR073308Third green 30.537
CRR073309Second white 10.000
CRR073310Second white 20.192
CRR073311Second white 30.264
CRR073312Silver flowering 10.030
CRR073313Silver flowering 20.262
CRR073314Silver flowering 30.228
CRR073315Gold flowering 11.725
CRR073316Gold flowering 23.599
CRR073317Gold flowering 31.803
CRR073318Tawny withering 112.152
CRR073319Tawny withering 213.603
CRR073320Tawny withering 318.025