Detail information of GWHGAAZE024255


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007143599.16.3684E-123hypothetical protein PHAVU_007G085200g [Phaseolus vulgaris]
COGYP_008431664.13E-18hypothetical protein N186_01315
Swissprottr|Q41640|RAB7_VIGAC2E-124Ras-related protein Rab7
trEMBLtr|V7BFB7|V7BFB7_PHAVU2E-123Uncharacterized protein {ECO:0000313|EMBL:ESW15593.1}
TAIR10AT4G09720.11E-85RAB GTPase homolog G3A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3865622338659594-
GWHAAZE00000007mRNA3865622338659594-
GWHAAZE00000007exon3865622338656372-
GWHAAZE00000007exon3865645238656532-
GWHAAZE00000007exon3865790938658055-
GWHAAZE00000007exon3865815738658256-
GWHAAZE00000007exon3865954238659594-
GWHAAZE00000007CDS3865954238659594-
GWHAAZE00000007CDS3865815738658256-
GWHAAZE00000007CDS3865790938658055-
GWHAAZE00000007CDS3865645238656532-
GWHAAZE00000007CDS3865622338656372-
Transcript Sequence

Network for GWHGAAZE024255

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras191676.10E-45
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07897RAB7A Endocytosis map04144
Phagosomemap04145
Autophagy - animalmap04140
Autophagy - yeastmap04138
Mitophagy - animalmap04137

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.905
SRR3591706second leaf10.048
SRR3591707mature leaf7.168
SRR3591708Shoot apex22.933
SRR3591709Stem13.936
SRR3591710White floral bud28.280
SRR3591711White flower28.308
SRR3591712Green floral bud24.605
SRR3591713Yellow flower29.744
SRP173429 SRR8316895Juvenile bud stage 14.409
SRR8316896Juvenile bud stage 24.508
SRR8316897Juvenile bud stage 15.783
SRR8316894Third green stage 9.187
SRR8316900Third green stage 29.555
SRR8316901Third green stage 32.025
SRR8316898Complete white stage 20.010
SRR8316899Complete white stage 32.392
SRR8316903Complete white stage 28.406
SRR8316902Silver flowering stage17.306
SRR8316904Silver flowering stage20.165
SRR8316905Silver flowering stage10.950
SRR8316906Gold flowering stage 33.981
SRR8316907Gold flowering stage 26.572
SRR8316908Gold flowering stage 27.834
SRP132670SRR6706286Control13.789
SRR6706287Light intensity 50%16.170
SRR6706288Light intensity 20%16.658
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.977
CNS0095593Slightly white alabastrum(diploid) 222.259
CNS0095594Slightly white alabastrum(diploid) 319.858
CNS0095595Whole white alabastrum(diploid) 222.585
CNS0095596Whole white alabastrum(diploid) 322.737
CNS0095597Whole white alabastrum(diploid) 419.900
CNS0095598Silvery flower (diploied) 115.119
CNS0095599Silvery flower (diploied) 219.837
CNS0095600Silvery flower (diploied) 324.078
CNS0095601Golden flower (diploid) 123.627
CNS0095602Golden flower (diploid) 222.405
CNS0095603Golden flower (diploid) 316.514
CNS0095604Slightly white alabastrum(tetraploid) 125.797
CNS0095605Slightly white alabastrum(tetraploid) 221.875
CNS0095606Slightly white alabastrum(tetraploid) 316.727
CNS0095607Whole white alabastrum(tetraploid) 117.304
CNS0095608Whole white alabastrum(tetraploid) 215.451
CNS0095609Whole white alabastrum(tetraploid) 321.398
CNS0095610Silvery flower (tetraploid) 121.442
CNS0095611Silvery flower (tetraploid) 220.490
CNS0095612Silvery flower (tetraploid) 321.645
CNS0095613Golden flower (tetraploid) 118.527
CNS0095614Golden flower (tetraploid) 221.801
CNS0095615Golden flower (tetraploid) 316.539
CRA001975CRR073297Stem 111.784
CRR073298Stem 212.572
CRR073299Stem 37.855
CRR073300Leaf 116.381
CRR073301Leaf 215.458
CRR073302Leaf 312.132
CRR073303Juvenile bud 112.902
CRR073304Juvenile bud 212.831
CRR073305Juvenile bud 37.440
CRR073306Third green 115.457
CRR073307Third green 217.612
CRR073308Third green 315.159
CRR073309Second white 14.264
CRR073310Second white 210.499
CRR073311Second white 38.193
CRR073312Silver flowering 16.510
CRR073313Silver flowering 24.707
CRR073314Silver flowering 310.941
CRR073315Gold flowering 13.379
CRR073316Gold flowering 25.464
CRR073317Gold flowering 32.078
CRR073318Tawny withering 19.536
CRR073319Tawny withering 26.331
CRR073320Tawny withering 37.031