Gene detail

Detail information of GWHGAAZE024262

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003555417.1	3.7227E-115	PREDICTED: cleavage stimulation factor subunit 2-like isoform X1 [Glycine max]
COG	YP_003504005.1	3E-15	RNP-1 like RNA-binding protein
Swissprot	tr\|Q9M9G6\|CTF64_ARATH	2E-99	Cleavage stimulating factor 64 {ECO:0000303\|PubMed:12379796}
trEMBL	tr\|I1NH74\|I1NH74_SOYBN	1E-115	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G31220.2}
TAIR10	AT1G71800.1	9E-76	cleavage stimulating factor 64

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38755024	38758300	+
GWHAAZE00000007	mRNA	38755024	38758300	+
GWHAAZE00000007	exon	38755024	38755054	+
GWHAAZE00000007	exon	38755632	38755710	+
GWHAAZE00000007	exon	38756726	38756900	+
GWHAAZE00000007	exon	38757217	38757250	+
GWHAAZE00000007	exon	38757870	38758120	+
GWHAAZE00000007	exon	38758205	38758300	+
GWHAAZE00000007	CDS	38755024	38755054	+
GWHAAZE00000007	CDS	38755632	38755710	+
GWHAAZE00000007	CDS	38756726	38756900	+
GWHAAZE00000007	CDS	38757217	38757250	+
GWHAAZE00000007	CDS	38757870	38758120	+
GWHAAZE00000007	CDS	38758205	38758300	+

Transcript Sequence
>GWHTAAZE024296 ATGGCCAATTCTCAGCACCGTTGCGTTTTCGTTGGGAACATACCGTATGATGCCACTGAAGAGCAGCTTATACAAATTTGTGAGGAGGTTGGTCCTGTTGTATCTTTCAGATTAGTTATTGATAGAGAAACTGGGAAGCCGAAAGGTTATGGATTCTGTGAATATAAGGACGAAGAAACTGCCTTAAGTGCTCGTCGTAATCTTCAGGGATACGAGATCAATGGTCGGCAATTGCGAGTTGATTTTGCTGAAAATGACAAGAACAATGATAGAACCCGGGATCAGGGTCGTGGTGGACCTGGTATGGCCGCTAATACTGACACACAAAAACAGTATGGGGGCCCTGCGGTCCACGGGGATTCTGGTCCGCACCAGCCAGTTGGTCTCCAAGTAGCTATGGAGGCAGCAGCCACTATGGCCAGAGCTCTTGGAGGTGCTCAGACTGCTATAAGCAACTTTAGTGAAAACAGTTTGCAAAGTCATCAGCCAGTATTGGGGACCGATCCTTTGACTCTTCAACTGGCCAAAATGTCAAGGAACCAGCTTACTGAGATTTTGTCCGAGATAAAGGTAATGGCTATGCAAAACAAGGAACTAGCTCGGCAGCTTTTACTTGCAACCCCACAGTTGCCAAAAGCTATTTTCCAGGTTATTATTTACCCCTGA

Network for GWHGAAZE024262

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	9	79	4.70E-23
PF14327.7	CSTF2_hinge	164	218	1.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14407	CSTF2, RNA15	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.397
	SRR3591706	second leaf	15.127
	SRR3591707	mature leaf	20.158
	SRR3591708	Shoot apex	16.835
	SRR3591709	Stem	27.309
	SRR3591710	White floral bud	33.012
	SRR3591711	White flower	31.532
	SRR3591712	Green floral bud	36.518
	SRR3591713	Yellow flower	29.220
SRP173429	SRR8316895	Juvenile bud stage	17.395
	SRR8316896	Juvenile bud stage	23.352
	SRR8316897	Juvenile bud stage	11.691
	SRR8316894	Third green stage	10.771
	SRR8316900	Third green stage	30.585
	SRR8316901	Third green stage	32.297
	SRR8316898	Complete white stage	19.214
	SRR8316899	Complete white stage	41.822
	SRR8316903	Complete white stage	24.605
	SRR8316902	Silver flowering stage	14.501
	SRR8316904	Silver flowering stage	17.700
	SRR8316905	Silver flowering stage	9.511
	SRR8316906	Gold flowering stage	33.589
	SRR8316907	Gold flowering stage	28.344
	SRR8316908	Gold flowering stage	47.697
SRP132670	SRR6706286	Control	34.387
	SRR6706287	Light intensity 50%	36.452
	SRR6706288	Light intensity 20%	40.463
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.142
	CNS0095593	Slightly white alabastrum(diploid) 2	12.086
	CNS0095594	Slightly white alabastrum(diploid) 3	14.471
	CNS0095595	Whole white alabastrum(diploid) 2	13.288
	CNS0095596	Whole white alabastrum(diploid) 3	21.046
	CNS0095597	Whole white alabastrum(diploid) 4	15.549
	CNS0095598	Silvery flower (diploied) 1	21.689
	CNS0095599	Silvery flower (diploied) 2	15.709
	CNS0095600	Silvery flower (diploied) 3	38.476
	CNS0095601	Golden flower (diploid) 1	11.470
	CNS0095602	Golden flower (diploid) 2	36.626
	CNS0095603	Golden flower (diploid) 3	37.612
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.862
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.633
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.889
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.990
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.820
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.292
	CNS0095610	Silvery flower (tetraploid) 1	36.999
	CNS0095611	Silvery flower (tetraploid) 2	37.464
	CNS0095612	Silvery flower (tetraploid) 3	34.109
	CNS0095613	Golden flower (tetraploid) 1	17.809
	CNS0095614	Golden flower (tetraploid) 2	32.896
	CNS0095615	Golden flower (tetraploid) 3	34.876
CRA001975	CRR073297	Stem 1	24.392
	CRR073298	Stem 2	26.789
	CRR073299	Stem 3	27.154
	CRR073300	Leaf 1	27.763
	CRR073301	Leaf 2	25.661
	CRR073302	Leaf 3	35.554
	CRR073303	Juvenile bud 1	39.744
	CRR073304	Juvenile bud 2	27.786
	CRR073305	Juvenile bud 3	39.023
	CRR073306	Third green 1	21.075
	CRR073307	Third green 2	21.814
	CRR073308	Third green 3	19.482
	CRR073309	Second white 1	14.599
	CRR073310	Second white 2	25.707
	CRR073311	Second white 3	23.862
	CRR073312	Silver flowering 1	17.797
	CRR073313	Silver flowering 2	25.376
	CRR073314	Silver flowering 3	21.684
	CRR073315	Gold flowering 1	13.708
	CRR073316	Gold flowering 2	23.984
	CRR073317	Gold flowering 3	19.097
	CRR073318	Tawny withering 1	32.794
	CRR073319	Tawny withering 2	21.452
	CRR073320	Tawny withering 3	31.799