Gene detail

Detail information of GWHGAAZE024267

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP16496.1	1.9742E-151	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SS35\|FB137_ARATH	0.000000002	Putative F-box protein At3g10240
trEMBL	tr\|A0A068V739\|A0A068V739_COFCA	7E-152	Coffea canephora DH200=94 genomic scaffold, scaffold_128 {ECO:0000313\|EMBL:CDP16496.1}
TAIR10	AT4G12560.2	3E-13	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38795650	38797712	+
GWHAAZE00000007	mRNA	38795650	38797712	+
GWHAAZE00000007	exon	38795650	38796766	+
GWHAAZE00000007	exon	38796870	38796911	+
GWHAAZE00000007	exon	38797004	38797054	+
GWHAAZE00000007	exon	38797642	38797712	+
GWHAAZE00000007	CDS	38795650	38796766	+
GWHAAZE00000007	CDS	38796870	38796911	+
GWHAAZE00000007	CDS	38797004	38797054	+
GWHAAZE00000007	CDS	38797642	38797712	+

Transcript Sequence
>GWHTAAZE024301 ATGATGTCAAAGCTGATGGCAGAGGAAGGCACTGCCTTTTTAAGGTTGGTGGAAGAGAGAGCATTATCAAAGAAGCAGCTTGAGGAAGAGAAAAAGAAGCAAGTAGTGAATCTTGTACCTTATCTTCCTAAAGATTGCATCTCCAACATCCTTATTCGACTTCCTATCGAATCTCTTCACAGGTCAAGGTTTGTTTGTAAGCCATGGCATAAAATTGTCAATACTCGTACTTTCATTGATACCCATCTCCATCGCGCCGAAAATGTCTTTATCTTTCTAGATTCACTTCAATTTTTTCACCGTTATTCTACAAAATCACTCCCAAAAGAAAAACCCAACACCTTTTCACTTGAAGCAAAGCTCTTTCAAAGGCAAAATGTGCATGTATTTAACCAACCGGTCATAAGCCCATCATCAAAGTTCCATCTGAAGTACATGGAAATTAAAGATGGGAAGAGCAAGATTGGCGAATTCAATGCGACTTGTTTGGGTAGAATAAGAGCAACTTGCAATGGCCTAATTCTTCTTGATAACAAGATGAAGAAAGGAGGACTAATTGTTATGAATCCGGTGACTAAGGAGTTTGATCCGCTTCCTCTTGGAAGTATATATCCTTCCCATGATGAATCTTACGGATTAGCATTTTGCGAATCCACAAGAGAATATAAAGTCGTTCACTTATTTCGAGATGAAATGCAGTTCGTTGGGTGTGAGATTCTAAAGCTTGGAACAAGATATTGGATTCCGGTGGACGGGCCATCTTTTGGGCTCTTTAATTGGTTTGGGTATGACCCGGTTTTTGCAATCGGGGGTTTACATTGGTCCCCGGAGATTGATCATTACGACTACTTAGTTTCTATGGGAGTCGATGATGAGAAGTTTATCAAGATCCCGCTTCCGAAGAACACTCGATACAACGAAAGAATCGTTGAAATGGGCGGGTTTCTTTGCTATGTGGCTCATGAAGAGATGAACCAAATTGATGTGTGGATCTTGAAGAATTTGTGTGGGGATGATTGGACAAAGAACTATACCATCAAGGTCGGTTGCATAAGAGATATGGTTCCTCTTTATTGTTCAAGATTTAATGGCGAAATGGTTCTTAAGGACAAAGACGCCTTGTCTCGTGGCGGGCCGAGGAAAAAGGTCAGGATATTTGGTGCTACTGCAACAGCTGTGAGTGCGAATGCAAAAGCATTTGATCAGATAAGCGAGAAAATGGTAATTGCTGCGGGCGCAATTCTGCAAGTTGGGATCAGTCCTACATTCAAAGTAGCGTAA

Network for GWHGAAZE024267

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	42	75	8.20E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.014
	SRR3591706	second leaf	3.637
	SRR3591707	mature leaf	13.609
	SRR3591708	Shoot apex	5.872
	SRR3591709	Stem	18.239
	SRR3591710	White floral bud	12.437
	SRR3591711	White flower	23.319
	SRR3591712	Green floral bud	8.856
	SRR3591713	Yellow flower	8.832
SRP173429	SRR8316895	Juvenile bud stage	6.180
	SRR8316896	Juvenile bud stage	5.961
	SRR8316897	Juvenile bud stage	3.581
	SRR8316894	Third green stage	3.234
	SRR8316900	Third green stage	9.012
	SRR8316901	Third green stage	8.190
	SRR8316898	Complete white stage	2.420
	SRR8316899	Complete white stage	26.496
	SRR8316903	Complete white stage	5.975
	SRR8316902	Silver flowering stage	3.258
	SRR8316904	Silver flowering stage	4.373
	SRR8316905	Silver flowering stage	1.204
	SRR8316906	Gold flowering stage	7.017
	SRR8316907	Gold flowering stage	4.827
	SRR8316908	Gold flowering stage	7.319
SRP132670	SRR6706286	Control	4.145
	SRR6706287	Light intensity 50%	3.809
	SRR6706288	Light intensity 20%	4.334
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.336
	CNS0095593	Slightly white alabastrum(diploid) 2	7.065
	CNS0095594	Slightly white alabastrum(diploid) 3	6.453
	CNS0095595	Whole white alabastrum(diploid) 2	5.969
	CNS0095596	Whole white alabastrum(diploid) 3	4.738
	CNS0095597	Whole white alabastrum(diploid) 4	5.699
	CNS0095598	Silvery flower (diploied) 1	17.822
	CNS0095599	Silvery flower (diploied) 2	10.104
	CNS0095600	Silvery flower (diploied) 3	15.443
	CNS0095601	Golden flower (diploid) 1	15.857
	CNS0095602	Golden flower (diploid) 2	18.178
	CNS0095603	Golden flower (diploid) 3	17.488
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.026
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.494
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.876
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.546
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.682
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.249
	CNS0095610	Silvery flower (tetraploid) 1	12.058
	CNS0095611	Silvery flower (tetraploid) 2	17.934
	CNS0095612	Silvery flower (tetraploid) 3	8.555
	CNS0095613	Golden flower (tetraploid) 1	4.184
	CNS0095614	Golden flower (tetraploid) 2	6.686
	CNS0095615	Golden flower (tetraploid) 3	8.059
CRA001975	CRR073297	Stem 1	4.426
	CRR073298	Stem 2	3.473
	CRR073299	Stem 3	3.251
	CRR073300	Leaf 1	3.932
	CRR073301	Leaf 2	4.256
	CRR073302	Leaf 3	3.862
	CRR073303	Juvenile bud 1	5.478
	CRR073304	Juvenile bud 2	4.829
	CRR073305	Juvenile bud 3	4.405
	CRR073306	Third green 1	0.451
	CRR073307	Third green 2	0.369
	CRR073308	Third green 3	1.027
	CRR073309	Second white 1	0.858
	CRR073310	Second white 2	1.012
	CRR073311	Second white 3	0.501
	CRR073312	Silver flowering 1	0.174
	CRR073313	Silver flowering 2	0.421
	CRR073314	Silver flowering 3	0.183
	CRR073315	Gold flowering 1	4.901
	CRR073316	Gold flowering 2	5.496
	CRR073317	Gold flowering 3	6.063
	CRR073318	Tawny withering 1	4.179
	CRR073319	Tawny withering 2	4.065
	CRR073320	Tawny withering 3	4.795