Gene detail

Detail information of GWHGAAZE024268

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002521772.1	2.2208E-141	conserved hypothetical protein [Ricinus communis]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	3E-17	F-box protein CPR30
trEMBL	tr\|B9S703\|B9S703_RICCO	8E-142	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF40582.1}
TAIR10	AT4G12560.2	3E-16	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38802289	38803506	+
GWHAAZE00000007	mRNA	38802289	38803506	+
GWHAAZE00000007	exon	38802289	38803506	+
GWHAAZE00000007	CDS	38802289	38803506	+

Transcript Sequence
>GWHTAAZE024302 ATGATGGAGAAACCAAAGGCAGACAAAAAAACAGAGTTAATAAGGTTAGTAGCGGAAAGAGCATTGTCAAAGAAGCAGCGGTTCGATCTTGTACCTTATTTTCCAAAAGAAATCGTCTCCGATATTCTCCTTCGACTTCCTCCTGAAACTCTTCAAAGTTTAAGGTTTGTTTGCAAGGCATGGCATAAAATTACACTCACTCACGATTTCATTGACACCCATCTCCGCCAAACAGAGCCCGTCTTAATCTTTCAAACTTCAGTTGGAAACGAATCTTCACAAGAAAAGCCAAACACTTTCTCTGTTGAAGCTAAGCTTTTGCAGAAGGGATCTTTAAACATATTTCCCCAACCCGTAGTACAGCCGTCATCAAACTTCATTTTAAAATTCTTGGCAGTTAAAGACGGCAAGATCGATGTAGGAGAGTTCAATGTTACTTGTTTGGGAAAAATCAGAGCGACTTGCAACGGCCTAATTCTTCTTGATGATAAGATGAAGAAAGGGGGATTGATCGTGATGAACCCTGTGACTAAGGAATTATGTGGGCTTCCTCCGGGTACTATATTCCCACCGCACTTCGAATCATATGGGTTAGCTTATTGCAGACGTACCAGAGAATATAAGCTGGTTCACTTGTTTCAGGATGAGATGCGCTTTGTTGGTTGTGAGATTCTAACACTTGGAACCCGATCTTGGAGGGCAATAGATGGACCCTCCATGGGTCTCTTTCAGCAGTTCTGTTTTCACCCAGTTTTCGCACTCGGGGCATTGCATTGGATTCCTCGCATTGGTAATAATAATTATGTAGTTTCCCTGGCAATGGATGAAGAAAAGTTTCACAAGACACTGCTCCCTACAAGTGATAGACCCAATGATACGATTCTTGAAATGGGTGGGCTTCTTAGTTTTCTGACCCGTGAAAAAAGGAACCAAATTGATGTGTGGGTCTTGAAGGAATTGCACGGGGAAGATTGGACAAAGAGGTACAGTATCACATCGGGTTGGGTGAAGCGTATGGTTCCTCTTTATGCTAGATTTAATGGGGAGATAGTTTTCAAGGATGATAAGGGGTTTTTGTATGCTTATGATATCCAATTAAAATTTGTGAAAAAAATCGAGATGGAAAAGGGATTTGAACCTGGTTATGGCCTTAGTTTCCCTCATGTCAACACCATTGTCTCGTGGCGAAAGGTGAAAAATGGCGAGGATGTTTGGTAA

Network for GWHGAAZE024268

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	33	69	7.40E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.682
	SRR3591706	second leaf	14.443
	SRR3591707	mature leaf	16.158
	SRR3591708	Shoot apex	32.471
	SRR3591709	Stem	29.716
	SRR3591710	White floral bud	27.380
	SRR3591711	White flower	28.174
	SRR3591712	Green floral bud	33.199
	SRR3591713	Yellow flower	11.386
SRP173429	SRR8316895	Juvenile bud stage	22.908
	SRR8316896	Juvenile bud stage	31.148
	SRR8316897	Juvenile bud stage	9.444
	SRR8316894	Third green stage	11.433
	SRR8316900	Third green stage	30.835
	SRR8316901	Third green stage	28.841
	SRR8316898	Complete white stage	14.342
	SRR8316899	Complete white stage	49.417
	SRR8316903	Complete white stage	18.193
	SRR8316902	Silver flowering stage	11.738
	SRR8316904	Silver flowering stage	17.162
	SRR8316905	Silver flowering stage	8.266
	SRR8316906	Gold flowering stage	24.652
	SRR8316907	Gold flowering stage	20.165
	SRR8316908	Gold flowering stage	20.115
SRP132670	SRR6706286	Control	14.736
	SRR6706287	Light intensity 50%	14.469
	SRR6706288	Light intensity 20%	14.650
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.216
	CNS0095593	Slightly white alabastrum(diploid) 2	30.335
	CNS0095594	Slightly white alabastrum(diploid) 3	25.639
	CNS0095595	Whole white alabastrum(diploid) 2	25.993
	CNS0095596	Whole white alabastrum(diploid) 3	21.277
	CNS0095597	Whole white alabastrum(diploid) 4	22.815
	CNS0095598	Silvery flower (diploied) 1	36.149
	CNS0095599	Silvery flower (diploied) 2	29.919
	CNS0095600	Silvery flower (diploied) 3	42.496
	CNS0095601	Golden flower (diploid) 1	35.241
	CNS0095602	Golden flower (diploid) 2	44.022
	CNS0095603	Golden flower (diploid) 3	41.070
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.717
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.173
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.058
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.594
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.397
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.410
	CNS0095610	Silvery flower (tetraploid) 1	32.336
	CNS0095611	Silvery flower (tetraploid) 2	41.449
	CNS0095612	Silvery flower (tetraploid) 3	30.579
	CNS0095613	Golden flower (tetraploid) 1	16.951
	CNS0095614	Golden flower (tetraploid) 2	28.274
	CNS0095615	Golden flower (tetraploid) 3	21.187
CRA001975	CRR073297	Stem 1	21.466
	CRR073298	Stem 2	18.758
	CRR073299	Stem 3	19.847
	CRR073300	Leaf 1	17.535
	CRR073301	Leaf 2	13.163
	CRR073302	Leaf 3	13.438
	CRR073303	Juvenile bud 1	16.043
	CRR073304	Juvenile bud 2	11.987
	CRR073305	Juvenile bud 3	23.562
	CRR073306	Third green 1	7.174
	CRR073307	Third green 2	7.285
	CRR073308	Third green 3	9.106
	CRR073309	Second white 1	6.836
	CRR073310	Second white 2	7.352
	CRR073311	Second white 3	5.111
	CRR073312	Silver flowering 1	5.152
	CRR073313	Silver flowering 2	4.652
	CRR073314	Silver flowering 3	2.868
	CRR073315	Gold flowering 1	11.352
	CRR073316	Gold flowering 2	9.054
	CRR073317	Gold flowering 3	10.254
	CRR073318	Tawny withering 1	22.051
	CRR073319	Tawny withering 2	13.966
	CRR073320	Tawny withering 3	18.389