Gene detail

Detail information of GWHGAAZE024281

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283468.1	0	PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera]
Swissprot	tr\|O22719\|LHTL3_ARATH	2E-16	Lysine histidine transporter-like 3
trEMBL	tr\|D7SXA8\|D7SXA8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22205.3}
TAIR10	AT3G28960.1	5E-118	Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39240004	39243682	-
GWHAAZE00000007	mRNA	39240004	39243682	-
GWHAAZE00000007	exon	39240004	39240519	-
GWHAAZE00000007	exon	39241865	39242517	-
GWHAAZE00000007	exon	39243523	39243682	-
GWHAAZE00000007	CDS	39243523	39243682	-
GWHAAZE00000007	CDS	39241865	39242517	-
GWHAAZE00000007	CDS	39240004	39240519	-

Transcript Sequence
>GWHTAAZE024315 ATGGAGGACCACCCACAACATGGTTACTCAGTTACCATACCCCTCCTGTTTGGCAATGAGGATAAGCGGCAGCAAGAGGCCGAGGAGGTGGAGGATTCACTTGGTGGTCATCATTCCTCCATTAAAGGCACCACCTCCTTTTTCAAAACCTGCTTCAATGTGATAGGCCAAGTGAACTTAAATTCTCTGTGCTTTGTTTTCTCAGGAGTGGGGATACTGTCAATCTCGTACGCGTTGGCCTCGGGAGGGTGGCTAAGTTTGTTGCTTCTTTTCATTATCGCCACCTCAACTTTCTACACGGGCTTATTAATCAAAAAATGTATGGATGTCGATCCAAACATAAGAACCTATCCCGACATTGGATATTGTGCATTTGGGACAAAAGGAAGGATAGCGATATCCATCATCATGAATCTTGAGCTGTACTTAGTTGCGACGGGATTCCTTATCCTCGAAGGAGATAACCTATACAACTTGCTTCCAGCGATGGGATTCAAAATAGGCGGGATTAGTATTAGTGGAAGGCAAAGCTTTGTGGTGATTGTTGGTATTATTGTTTTGCCTACTGTTTGGTTGAACAACTTGAGTGTTCTTTCTTATATATCGGCCAGCGGAGTTCTAGCTTCTGTTATAATCCTTGGGTCAATTTTGTGCGCCGGCGCATTTGATGGAATTGGTTTTGAGGAAAAAGGGGAGCTAATAAATTGGAATGGAATTCCAACTGCCGTTAGCCTGTACGCATTTTGCTATTGTGCTCATCCACTTTTTCCTACACTATACACTTCTATGACAAACCAAAGACAATTCTCCAAGGTATTGCTCCTGTGCTTTGTCTTCTGTACCGCAACGTATGCATCAATGGCAGTTTTGGGTTACCTCATGTTCGGTTCGAACATAAATTCACAAATAACCTTAAATCTTCCAACCAGAATGATGAGCTCAAGAGTGGCCATTTGTGTCACTTTGGTCAATCCGCTAGCCAAATACGCGCTAATGGTAACACCTATTATTAACTCTATTGAGAACCGGTTTCGATGTTATTGCACTAAAAGACCATTTAGCCTTCTGATTAGAACCATCTTAGTTACCAGTACTGTTGTTGTAGCACTGGCAGTCCCCTTCTTCGGTTATCTAATGTCTCTTGTTGGAGCTGTTCTAAGTGTCACAGCATCGGTTTTGCTTCCGTGCTTTTGCTACTTGAAGATTTCAGGTAATTATCGAAGATTTGGGTTTGAATTAGTGATTATAGGGGGCATTGTGGTAATGGGTGTATTGGTTTTAGTAATCGGAACGTACAGTTCTTTGGCACAAATAATACAGCATCTTTAA

Network for GWHGAAZE024281

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.19	Aa_trans	67	433	1.60E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15015	SLC32A, VGAT	GABAergic synapse	map04727
		Retrograde endocannabinoid signaling	map04723
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.142
	SRR3591706	second leaf	0.369
	SRR3591707	mature leaf	0.621
	SRR3591708	Shoot apex	0.176
	SRR3591709	Stem	0.764
	SRR3591710	White floral bud	16.290
	SRR3591711	White flower	30.081
	SRR3591712	Green floral bud	5.050
	SRR3591713	Yellow flower	64.941
SRP173429	SRR8316895	Juvenile bud stage	0.614
	SRR8316896	Juvenile bud stage	0.481
	SRR8316897	Juvenile bud stage	0.048
	SRR8316894	Third green stage	0.046
	SRR8316900	Third green stage	2.005
	SRR8316901	Third green stage	1.773
	SRR8316898	Complete white stage	9.454
	SRR8316899	Complete white stage	0.763
	SRR8316903	Complete white stage	12.887
	SRR8316902	Silver flowering stage	52.266
	SRR8316904	Silver flowering stage	64.197
	SRR8316905	Silver flowering stage	20.799
	SRR8316906	Gold flowering stage	115.475
	SRR8316907	Gold flowering stage	101.873
	SRR8316908	Gold flowering stage	200.552
SRP132670	SRR6706286	Control	0.870
	SRR6706287	Light intensity 50%	1.362
	SRR6706288	Light intensity 20%	0.292
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.236
	CNS0095593	Slightly white alabastrum(diploid) 2	0.390
	CNS0095594	Slightly white alabastrum(diploid) 3	0.763
	CNS0095595	Whole white alabastrum(diploid) 2	3.026
	CNS0095596	Whole white alabastrum(diploid) 3	3.326
	CNS0095597	Whole white alabastrum(diploid) 4	3.671
	CNS0095598	Silvery flower (diploied) 1	5.261
	CNS0095599	Silvery flower (diploied) 2	8.361
	CNS0095600	Silvery flower (diploied) 3	45.045
	CNS0095601	Golden flower (diploid) 1	22.474
	CNS0095602	Golden flower (diploid) 2	96.273
	CNS0095603	Golden flower (diploid) 3	87.006
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.207
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.819
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.040
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.354
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.813
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.344
	CNS0095610	Silvery flower (tetraploid) 1	66.140
	CNS0095611	Silvery flower (tetraploid) 2	26.596
	CNS0095612	Silvery flower (tetraploid) 3	15.389
	CNS0095613	Golden flower (tetraploid) 1	112.006
	CNS0095614	Golden flower (tetraploid) 2	74.137
	CNS0095615	Golden flower (tetraploid) 3	120.582
CRA001975	CRR073297	Stem 1	0.151
	CRR073298	Stem 2	0.161
	CRR073299	Stem 3	0.056
	CRR073300	Leaf 1	0.128
	CRR073301	Leaf 2	0.172
	CRR073302	Leaf 3	0.382
	CRR073303	Juvenile bud 1	0.470
	CRR073304	Juvenile bud 2	1.184
	CRR073305	Juvenile bud 3	0.328
	CRR073306	Third green 1	9.978
	CRR073307	Third green 2	14.106
	CRR073308	Third green 3	9.433
	CRR073309	Second white 1	16.696
	CRR073310	Second white 2	10.477
	CRR073311	Second white 3	14.894
	CRR073312	Silver flowering 1	29.820
	CRR073313	Silver flowering 2	24.259
	CRR073314	Silver flowering 3	25.497
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.075
	CRR073317	Gold flowering 3	0.407
	CRR073318	Tawny withering 1	0.814
	CRR073319	Tawny withering 2	0.698
	CRR073320	Tawny withering 3	0.126