Gene detail

Detail information of GWHGAAZE024283

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010661065.1	0	PREDICTED: structural maintenance of chromosomes protein 4 isoform X2 [Vitis vinifera]
COG	YP_183430.1	4E-74	chromosome segregation ATPase
Swissprot	tr\|Q9FJL0\|SMC4_ARATH	0	Structural maintenance of chromosomes protein 4
trEMBL	tr\|D7SXB5\|D7SXB5_VITVI	0	Structural maintenance of chromosomes protein {ECO:0000256\|PIRNR:PIRNR005719}
TAIR10	AT5G48600.2	0	structural maintenance of chromosome 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39290753	39304954	-
GWHAAZE00000007	mRNA	39290753	39304954	-
GWHAAZE00000007	exon	39304793	39304954	-
GWHAAZE00000007	exon	39304021	39304110	-
GWHAAZE00000007	exon	39303496	39303597	-
GWHAAZE00000007	exon	39303215	39303391	-
GWHAAZE00000007	exon	39302992	39303122	-
GWHAAZE00000007	exon	39302582	39302660	-
GWHAAZE00000007	exon	39302341	39302498	-
GWHAAZE00000007	exon	39302175	39302250	-
GWHAAZE00000007	exon	39301939	39302067	-
GWHAAZE00000007	exon	39301724	39301868	-
GWHAAZE00000007	exon	39300947	39301077	-
GWHAAZE00000007	exon	39300055	39300207	-
GWHAAZE00000007	exon	39298989	39299178	-
GWHAAZE00000007	exon	39297804	39297937	-
GWHAAZE00000007	exon	39297047	39297205	-
GWHAAZE00000007	exon	39296212	39296519	-
GWHAAZE00000007	exon	39295433	39295601	-
GWHAAZE00000007	exon	39295254	39295337	-
GWHAAZE00000007	exon	39294965	39295174	-
GWHAAZE00000007	exon	39294369	39294580	-
GWHAAZE00000007	exon	39293689	39293844	-
GWHAAZE00000007	exon	39293340	39293400	-
GWHAAZE00000007	exon	39291539	39291673	-
GWHAAZE00000007	exon	39291358	39291444	-
GWHAAZE00000007	exon	39290941	39291032	-
GWHAAZE00000007	exon	39290753	39290873	-
GWHAAZE00000007	CDS	39304793	39304954	-
GWHAAZE00000007	CDS	39304021	39304110	-
GWHAAZE00000007	CDS	39303496	39303597	-
GWHAAZE00000007	CDS	39303215	39303391	-
GWHAAZE00000007	CDS	39302992	39303122	-
GWHAAZE00000007	CDS	39302582	39302660	-
GWHAAZE00000007	CDS	39302341	39302498	-
GWHAAZE00000007	CDS	39302175	39302250	-
GWHAAZE00000007	CDS	39301939	39302067	-
GWHAAZE00000007	CDS	39301724	39301868	-
GWHAAZE00000007	CDS	39300947	39301077	-
GWHAAZE00000007	CDS	39300055	39300207	-
GWHAAZE00000007	CDS	39298989	39299178	-
GWHAAZE00000007	CDS	39297804	39297937	-
GWHAAZE00000007	CDS	39297047	39297205	-
GWHAAZE00000007	CDS	39296212	39296519	-
GWHAAZE00000007	CDS	39295433	39295601	-
GWHAAZE00000007	CDS	39295254	39295337	-
GWHAAZE00000007	CDS	39294965	39295174	-
GWHAAZE00000007	CDS	39294369	39294580	-
GWHAAZE00000007	CDS	39293689	39293844	-
GWHAAZE00000007	CDS	39293340	39293400	-
GWHAAZE00000007	CDS	39291539	39291673	-
GWHAAZE00000007	CDS	39291358	39291444	-
GWHAAZE00000007	CDS	39290941	39291032	-
GWHAAZE00000007	CDS	39290753	39290873	-

Transcript Sequence
>GWHTAAZE024317 ATGGCGACAGAGATGGAATTTGAGACCGCCGGCGGGTCAACGACCACCGGTCCAGAGTCAACGCCGGGGAGATCTAGAGCTCCGAGGCTGTTCATTAGAGAAATGGTCATGAAGAACTTCAAATCTTATGCTGGCGAACAACGCGTTGGCCCTTTCCACAAGAGTTTTTCGGCAGTTGTTGGCCCCAATGGCAGTGGGAAGAGCAATGTTATTGATGCTATGCTGTTTGTCTTTGGAAAGCGAGCCAAACAGATGCGTCTTAATAAAGTGTCTGAGCTCATTCACAATTCTACCAATCACCAGAATCTGGACAGTGCTCGTGTTTCTGTTCACTTTCAAGAGATCATTGATTTGGATGACGGGACATTTGAAGCTGTTCCGGGAAGTGATTTTACAATAAGTCGTGAGGCATTTCGAGATAACTCCTCTAAATACTCTATTAACGGGCGTGGAAGTAATTTCACCGAGGTTACAAAGAAACTCAAAGGGAAAGGTGTTGACTTGGACAATAACCGGTTTTTGATTCTTCAGGGTGAGGTTGAGCAGATATCACTGATGAAGCCAAAGTCACAAGGTCCGCATGATGAAGGTTTTCTTGAATATCTTGAGGATATAATTGGAACTAACAAATATGTTGAAAAGATTGATGAATCATTTAAGCAGCTAGAAGAACTTAATGAGAGAAGGTCGGGGGTTGTGCAAATGGTTAAGCTAGCAGAGAAAGAAAGAGATGGTTTGGAGGATGTGAAGAACGAAGCCGAAGCTTACATGCTTAAGGAGTTATCGCTCTTGAAATGGCAAGAAAAAACCACAAAACTGGCTTGTGAAGATAGTAGTGCTCAAATGGTTGAACTACAAGCTAATCTCTCCACCTTGGAAGAAAATCTAAAAAGTGAAAGGGAGAAGATTCAAGAAAATAACAAAACATTGAAGGAGCTTGAGGCCTTGCACACGAAGTATATGAAGAAACAAGAGGAACTTGATAGCGGACTTAGGTGTTGCAAGGATGAGTTCAAGGAGTTTGAAAGGCAGGATGTAAAGTACCGTGAAGATCTAAAGCATGTGAAACAAAAGATCAAGAAACTAGATGACAAGCTTGAGAAGGATTCAATAAAAATTGCTGACATCACAAAGGAGTGTGAAGAGTCAGCAAACCTGATTCCACAACTGGAGCAAGAAATTCCAGAACTGCAAAAGCTTTTGTCGGATGAAGACAAAGTATTAGAGGAAATTAATGAAAACTCCAAAGTTGAAACCGAAATATTCCGCGGTGAACTTGCAAAGGTACGTGCTGAGTTGGAACCATGGGAAAAACAATTGATTGAGCACAAGGGAAAACTTGAAGTTGCATCTAGTGAAAGCAAACTTTTGAATGAGAAGCATGAAGCCGGCCGTGCAGCTTTTGAGGGTGCTAAGAAGCAGTTGACCGATATAAAGAGAAAAATTGAAACAAAGACTTCAGCCATGCACGATGTACAAATTGAGTTAGAGAAAAACAAACATGAGGCATTGGAAGCTCGAAAAGTGGAACAAGAATCCCTAAAAGAACAAGAAGCACTGATTCCTCTCGAACAAGCTGCAAGACAAAAGGTTGCTGAGCTTTTATCTGTTATGGAATCTGAAAAGAGCCAGGGATCTGTCCTAAAAGCGATACTGCAAGCTAAAGAATCAAATGATATACAAGGAATATATGGTCGACTGGGCGATCTAGGTGCTATTGATGCAAAATATGATGTAGCCATATCAACAGCTTGTGGAGGACTTGATTATATTTTAGTGGAAACAACTGCTGCCGCACAAGCATGCGTGGAGTTACTTCGTAGGAAGAACCTTGGTGTTGCAACCTTCATGATTTTGGAAAAACAAGTTGACCATATGTCTAGGTTGAAGGAAAAAGTAAGCACACCAGAGGGAGTTCCTCGCCTTTTTGATTTGATTAAGGTTCAGGACGAGAGAACAAAACTTGCTTTCTTTGCAGCATTGGGGAACACTGTAGTGGCTAAAGACATTGATCAGGCAACTCGTATTGCATATGGTGGAAACAAAGAATTCCGGCGGGTTGTAACCCTTGATGGTGCGCTTTTTGAAAAATCCGGCACTATGAGTGGTGGAGGAAGCAAGCCCCGTGGTGGTAAGATGGGTACATCTATCAAAGCAACCAGTGTTTCCCAAGAAGCTGTTGCAAATGCTGAGAATGAACTCTCTGTGATCGTTGAAAAATTAAATACATTACGGCAAAAAATTTCCGATGCTGTGAGGTGTTACCAGGCCTTGGAAAAGCAGTTTCACATCTTGAGATGGAACTTGCGAAAAGCCAAAAAGAGCTTGAATTCAGAACATGCTTATTTAGAAAAACAACTTGATTCCCTAAAAACTGCATCGGAGCCAAAGAAGGAAGAACTTAATAGACTAGAGGAACTCACCAAAATTACATCAACAGAAGAAAAGGAGATTACCAGGCTCACTCAAGGTTCCAAGAAGGTGAAGGAGAAGGCTTTGGAGCTTCAGAGTAAAATAGAGAATGCAGGTGGTGAGAGACTGAAAAACCAAAAGTTGAAAGTTAACAAAATTCAGTCCAATATTGATAAAAACAGCACAGATATCAACCGTCACAAAGTTCAAATAGAAACGGGTCAAAAGATGATAAAGAAATTAACGAAGGTAATTGAAGACTCAAAGAAGGAGAGGGAAAAAGCTGCTGCGACGAAGGAAACTTTGCTTTTAACTTTTAAAGAGATAGAACAAAAGGCTTTTACGGTTCAGGAGAATTACAAGAAAACCCAAGAGTTAATCGATCAACACAAAGATGTGCTTGATAAAGCAAAATCTGACTATGAAGAATTAAAGAAAACTGTGGATCAGTTGCGGGCATCTGAGGTAGATGCCGACTACAAGTTGCAAGATTTGAAGAAAAATTACAAGGAGTTGGAAATGAAGGCAAAAGGATACAAGAAAAAGCTTGATGACTTGCATAATGCTCTATCGAAGCATATGGAACAAATTCAAAAAGATTTAGTGGATCCAGAAAAGCTTCAAGCAACACTTGCAGATGAACCTCTTGCCAAGGCTTGTGACCTTAAAAGAGCCCTTGAAATGGTGGCATTGCTTGAGGCACTATTGAAGGAGTTGAATCCAAATCTCGATTCAATCTCAGAATTGGATGAGTTCATGGAAGGATTCAACACGATATCGCTGAAGTTGAAAGAAATGTATCAGATGATCACACTGGGAGGGGATGCCGAACTTGAGCTAGTGGACTCCTTAGACCCTTTCTCTGAAGGTGTTGTTTTCAGTGTTAGACCTCCTAAGAAGAGTTGGAAGAATATTGCTAATTTATCTGGTGGTGAAAAGACTCTCAGCTCGTTAGCTCTCGTTTTCGCACTCCACCATTACAAACCAACACCGCTTTATGTAATGGATGAAATTGATGCTGCTCTGGCTGCATCAACTGGTTACTTGTACCTCGTGCAACGACATTTTCTGCAGTTTGAGAATTTACTAACCATCAAAGCACCTGGTATAACTGACCGCCTCAGGAACAACATGTTTGAGTTGGCAGATCGACTAGTTGGAATTTACAAAACAGATAATTGCACCAAGAGCATTACCATCAACCCTGCAAGTTTTGTGGTTTGTGAAAAAGCTGCTTAA

Network for GWHGAAZE024283

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.20	SMC_N	31	1200	1.70E-49
PF06470.14	SMC_hinge	561	677	2.70E-22

Protein Sequence

>GWHPAAZE024301
MATEMEFETAGGSTTTGPESTPGRSRAPRLFIREMVMKNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLDSARVSVHFQEIIDLDDGTFEAVPGSDFTISREAFRDNSSKYSINGRGSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKSQGPHDEGFLEYLEDIIGTNKYVEKIDESFKQLEELNERRSGVVQMVKLAEKERDGLEDVKNEAEAYMLKELSLLKWQEKTTKLACEDSSAQMVELQANLSTLEENLKSEREKIQENNKTLKELEALHTKYMKKQEELDSGLRCCKDEFKEFERQDVKYREDLKHVKQKIKKLDDKLEKDSIKIADITKECEESANLIPQLEQEIPELQKLLSDEDKVLEEINENSKVETEIFRGELAKVRAELEPWEKQLIEHKGKLEVASSESKLLNEKHEAGRAAFEGAKKQLTDIKRKIETKTSAMHDVQIELEKNKHEALEARKVEQESLKEQEALIPLEQAARQKVAELLSVMESEKSQGSVLKAILQAKESNDIQGIYGRLGDLGAIDAKYDVAISTACGGLDYILVETTAAAQACVELLRRKNLGVATFMILEKQVDHMSRLKEKVSTPEGVPRLFDLIKVQDERTKLAFFAALGNTVVAKDIDQATRIAYGGNKEFRRVVTLDGALFEKSGTMSGGGSKPRGGKMGTSIKATSVSQEAVANAENELSVIVEKLNTLRQKISDAVRCYQALEKQFHILRWNLRKAKKSLNSEHAYLEKQLDSLKTASEPKKEELNRLEELTKITSTEEKEITRLTQGSKKVKEKALELQSKIENAGGERLKNQKLKVNKIQSNIDKNSTDINRHKVQIETGQKMIKKLTKVIEDSKKEREKAAATKETLLLTFKEIEQKAFTVQENYKKTQELIDQHKDVLDKAKSDYEELKKTVDQLRASEVDADYKLQDLKKNYKELEMKAKGYKKKLDDLHNALSKHMEQIQKDLVDPEKLQATLADEPLAKACDLKRALEMVALLEALLKELNPNLDSISELDEFMEGFNTISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALAASTGYLYLVQRHFLQFENLLTIKAPGITDRLRNNMFELADRLVGIYKTDNCTKSITINPASFVVCEKAA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06675	SMC4	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0051276	biological_process	chromosome organization
GO:0005694	cellular_component	chromosome
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.159
	SRR3591706	second leaf	3.346
	SRR3591707	mature leaf	1.956
	SRR3591708	Shoot apex	25.290
	SRR3591709	Stem	5.604
	SRR3591710	White floral bud	3.189
	SRR3591711	White flower	3.785
	SRR3591712	Green floral bud	2.649
	SRR3591713	Yellow flower	2.035
SRP173429	SRR8316895	Juvenile bud stage	9.155
	SRR8316896	Juvenile bud stage	9.941
	SRR8316897	Juvenile bud stage	3.919
	SRR8316894	Third green stage	2.956
	SRR8316900	Third green stage	4.122
	SRR8316901	Third green stage	4.380
	SRR8316898	Complete white stage	1.360
	SRR8316899	Complete white stage	6.756
	SRR8316903	Complete white stage	3.316
	SRR8316902	Silver flowering stage	1.915
	SRR8316904	Silver flowering stage	3.930
	SRR8316905	Silver flowering stage	1.547
	SRR8316906	Gold flowering stage	4.287
	SRR8316907	Gold flowering stage	3.756
	SRR8316908	Gold flowering stage	3.631
SRP132670	SRR6706286	Control	3.005
	SRR6706287	Light intensity 50%	3.038
	SRR6706288	Light intensity 20%	3.443
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.756
	CNS0095593	Slightly white alabastrum(diploid) 2	3.282
	CNS0095594	Slightly white alabastrum(diploid) 3	4.817
	CNS0095595	Whole white alabastrum(diploid) 2	3.419
	CNS0095596	Whole white alabastrum(diploid) 3	2.435
	CNS0095597	Whole white alabastrum(diploid) 4	2.919
	CNS0095598	Silvery flower (diploied) 1	5.710
	CNS0095599	Silvery flower (diploied) 2	5.999
	CNS0095600	Silvery flower (diploied) 3	3.679
	CNS0095601	Golden flower (diploid) 1	4.379
	CNS0095602	Golden flower (diploid) 2	2.662
	CNS0095603	Golden flower (diploid) 3	2.957
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.179
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.759
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.191
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.151
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.880
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.979
	CNS0095610	Silvery flower (tetraploid) 1	1.169
	CNS0095611	Silvery flower (tetraploid) 2	1.102
	CNS0095612	Silvery flower (tetraploid) 3	0.675
	CNS0095613	Golden flower (tetraploid) 1	0.272
	CNS0095614	Golden flower (tetraploid) 2	0.379
	CNS0095615	Golden flower (tetraploid) 3	0.429
CRA001975	CRR073297	Stem 1	9.906
	CRR073298	Stem 2	6.818
	CRR073299	Stem 3	5.273
	CRR073300	Leaf 1	2.591
	CRR073301	Leaf 2	2.525
	CRR073302	Leaf 3	1.828
	CRR073303	Juvenile bud 1	2.135
	CRR073304	Juvenile bud 2	1.440
	CRR073305	Juvenile bud 3	1.796
	CRR073306	Third green 1	0.277
	CRR073307	Third green 2	0.263
	CRR073308	Third green 3	0.602
	CRR073309	Second white 1	0.409
	CRR073310	Second white 2	0.408
	CRR073311	Second white 3	0.282
	CRR073312	Silver flowering 1	0.134
	CRR073313	Silver flowering 2	0.186
	CRR073314	Silver flowering 3	0.068
	CRR073315	Gold flowering 1	0.529
	CRR073316	Gold flowering 2	0.406
	CRR073317	Gold flowering 3	0.102
	CRR073318	Tawny withering 1	2.966
	CRR073319	Tawny withering 2	2.471
	CRR073320	Tawny withering 3	3.873