Gene detail

Detail information of GWHGAAZE024284

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010257380.1	2.95682E-66	PREDICTED: zinc-finger homeodomain protein 9 [Nelumbo nucifera]
Swissprot	tr\|Q9SEZ1\|ZHD11_ARATH	7E-49	Zinc-finger homeodomain protein 11
trEMBL	tr\|M1B2L0\|M1B2L0_SOLTU	1E-59	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400035635}
TAIR10	AT1G69600.1	2E-28	zinc finger homeodomain 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39386195	39386869	+
GWHAAZE00000007	mRNA	39386195	39386869	+
GWHAAZE00000007	exon	39386195	39386352	+
GWHAAZE00000007	exon	39386416	39386869	+
GWHAAZE00000007	CDS	39386195	39386352	+
GWHAAZE00000007	CDS	39386416	39386869	+

Transcript Sequence
>GWHTAAZE024318 ATGGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCCTCACCGGCAGCCCCGCTAAAATGCGCCGCGATCTCGCTAATGTGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGGGAACCTGACGACTACCACGCGCCGGCCCCCGTGCACCCGGAATCACCATCACCGCCGCCGATCTCCTCCTCCTACTACCCATCTGCCCCCCATATGCTCCTCGCACTCAGCGCCGGACTATCAGGCCAACTGGAAAATCCAAATCCTGCAAAACCTGCCACAGCCGATGCCGGAGCTCCGGCGAACGGAAACCAACATAGCCGAAAGAGGTTTAGAACAAAATTTACACAGAATCAGAAGGAGAAAATGCATGAATTTGCAGAGAGGGTCCAGTGGAAGATTCAGAGGAGTGATGAAGCTCTGATTAAAGACTTTTGTAGCGAAATTGGTGTGGAGAGAGGGGTGTTGAAGGTTTGGATGCATAACAATAAGAGCATTTTGGGGAAAAAAGATGAAAATAATCACATAAAGCTAAGCGAAAATCTTCATAAGGAAGAAATTTCTAGTCCTGGTGTTGTAAACACTAATGGGTCTTCTTCTTCATCTTAA

Network for GWHGAAZE024284

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04770.13	ZF-HD_dimer	1	43	2.00E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	zf-HD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	69.868
	SRR3591706	second leaf	31.580
	SRR3591707	mature leaf	39.315
	SRR3591708	Shoot apex	49.748
	SRR3591709	Stem	70.366
	SRR3591710	White floral bud	35.103
	SRR3591711	White flower	19.336
	SRR3591712	Green floral bud	24.720
	SRR3591713	Yellow flower	13.402
SRP173429	SRR8316895	Juvenile bud stage	12.563
	SRR8316896	Juvenile bud stage	9.980
	SRR8316897	Juvenile bud stage	4.118
	SRR8316894	Third green stage	7.969
	SRR8316900	Third green stage	24.563
	SRR8316901	Third green stage	26.725
	SRR8316898	Complete white stage	15.509
	SRR8316899	Complete white stage	45.955
	SRR8316903	Complete white stage	24.894
	SRR8316902	Silver flowering stage	7.770
	SRR8316904	Silver flowering stage	10.473
	SRR8316905	Silver flowering stage	6.321
	SRR8316906	Gold flowering stage	15.556
	SRR8316907	Gold flowering stage	25.799
	SRR8316908	Gold flowering stage	20.097
SRP132670	SRR6706286	Control	39.838
	SRR6706287	Light intensity 50%	35.788
	SRR6706288	Light intensity 20%	34.220
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.171
	CNS0095593	Slightly white alabastrum(diploid) 2	17.269
	CNS0095594	Slightly white alabastrum(diploid) 3	8.504
	CNS0095595	Whole white alabastrum(diploid) 2	14.310
	CNS0095596	Whole white alabastrum(diploid) 3	8.551
	CNS0095597	Whole white alabastrum(diploid) 4	9.944
	CNS0095598	Silvery flower (diploied) 1	38.628
	CNS0095599	Silvery flower (diploied) 2	33.198
	CNS0095600	Silvery flower (diploied) 3	37.807
	CNS0095601	Golden flower (diploid) 1	22.284
	CNS0095602	Golden flower (diploid) 2	43.718
	CNS0095603	Golden flower (diploid) 3	42.111
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.453
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.046
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.355
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.316
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.121
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.573
	CNS0095610	Silvery flower (tetraploid) 1	15.948
	CNS0095611	Silvery flower (tetraploid) 2	25.773
	CNS0095612	Silvery flower (tetraploid) 3	26.411
	CNS0095613	Golden flower (tetraploid) 1	17.900
	CNS0095614	Golden flower (tetraploid) 2	16.527
	CNS0095615	Golden flower (tetraploid) 3	19.450
CRA001975	CRR073297	Stem 1	23.694
	CRR073298	Stem 2	26.114
	CRR073299	Stem 3	26.540
	CRR073300	Leaf 1	34.071
	CRR073301	Leaf 2	36.496
	CRR073302	Leaf 3	26.739
	CRR073303	Juvenile bud 1	30.926
	CRR073304	Juvenile bud 2	22.619
	CRR073305	Juvenile bud 3	44.501
	CRR073306	Third green 1	16.261
	CRR073307	Third green 2	17.054
	CRR073308	Third green 3	20.215
	CRR073309	Second white 1	9.016
	CRR073310	Second white 2	4.119
	CRR073311	Second white 3	5.544
	CRR073312	Silver flowering 1	2.503
	CRR073313	Silver flowering 2	5.304
	CRR073314	Silver flowering 3	5.642
	CRR073315	Gold flowering 1	35.423
	CRR073316	Gold flowering 2	35.428
	CRR073317	Gold flowering 3	45.842
	CRR073318	Tawny withering 1	37.821
	CRR073319	Tawny withering 2	18.146
	CRR073320	Tawny withering 3	35.048