Gene detail

Detail information of GWHGAAZE024314

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP21206.1	0	unnamed protein product [Coffea canephora]
COG	YP_643282.1	2E-26	serine/threonine protein kinase
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	5E-132	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|F6H5Q2\|F6H5Q2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47523.1}
TAIR10	AT4G08850.1	3E-108	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39893597	39895757	+
GWHAAZE00000007	mRNA	39893597	39895757	+
GWHAAZE00000007	exon	39893597	39895181	+
GWHAAZE00000007	exon	39895390	39895757	+
GWHAAZE00000007	CDS	39893597	39895181	+
GWHAAZE00000007	CDS	39895390	39895757	+

Transcript Sequence
>GWHTAAZE024348 ATGGCTATATGGCTATTAGGCATTACTAAAGTTTTAGCAGTAACATCGGCTACTGCTAGTAATAATAATTCCTCACGACCTACATGGTTAGAAAGAGAGGCTGCAGCTCTAGCGGAAATCTTCAGGATGCATGTGGACCCTGGGTCTACGCGTCATTGTAACTGGTACGGCATCGGTTGCAATAAGGCAGGAAGTGTTACTTCTATATATGTAACCTATCCTCGAAGTGATTATTCTCATGATGGAGTTCATATGAACGAGCTTAACTTGTCTTCATTTCGAAACCTTGAAAGGCTTCATCTTTCCAATTGTGGGCTTAAAGGAACCATCACATATGAAATCGGAATGCTTTCAAAACTGACCTACCTTTCTCTTGCTGGCAATTCTCTTGAAGGTAACTTACCTTTGAGGAATTTGAAGAAATTGAAATTTCTGATCCTTAGCAGCAACTCTTTTTCTGGTCCAATCCCTTCATCTATTGGTTTCATTACCCATTTAATCCACTTAGACCTTCGCAACAATCAACTCACCGGGTCCATCCCATCCGAATTAGGAAATTTGAAGTATTTGGAAAGTTTGAAACTTAGTAACAACGTCCTTTCAGGACCAATCCCTTCATCTATCGGTTTCTTAACCCATTTAACATACTTGGACCTTTCTAGGAATCATCTCACCGGGTCCATTCCACCTTTAGGACATTTGTCAAACTTAAATATCCTGGATTTCTCCTTCAATAATCTCTCTGGCAAGATCCCCAATAACATCTGTAAATTGTATTACAACAACAAAATAATTAGCTTGCATGGCAATGACCTGCTGAGCCCACTTGAATGTCCATTGTCTTCAAAGGACACGGGGAACACAGTCAAGCTTTTCTCCCTCATGATTCTTCCTGCTGAAATTTCCGTCATTTTCTTCGTCATTCTCCTAATTAGTTTCTTTTTCCGGCATAAGGCTATAAAAGATGGGAGCAAAGGAAGAGTAATGAAGCATGGAGACGTGTGCTCCATATGGAATTATGATGGGACAATTGCGTACGAAGACATCATCAGATCAACAAATGACTTCGATATTAAATACTGCATCGGTACTGGCGGGTATGGCAGTGTCTACCGTGCTCACCTACCTAGTGGAAAAGTAGTCGCCTTAAAGAAGCTTCATCAATTTGAAGCAGAGGAACCAGCTTTCGACCAGAGTTTCAAGAATGAGATACAAGTTTTATCCAACATAAGACATAAAAACATTGTCAAGCTTCACGGGTTTTGTTTGCACAATAGATGCATGTTCCTAGTTTATGAATACATGGAAAGGGGAAGTTTATTCTGTACCCTAAGAGATGATGCTGAGGCTGTAGAATTGGATTGGACTAAAAGGGTGAACATTATTAAAGGCATAACACATGCTTTATCATACATGCATCACGATTGTACTCCACCTATTGTTCATCGGGACATTTCAAGTAATAACATACTCTTGAACTCCAAACTGGAGGCATTTGTAGCCGACTTTGGTGCAGCTAGATTGCTATCTCCTGATTCGTCCAATCAAACTTTAATTGCAGGCACCTCCGGATATATTGCCCCAGAACTTGCCTACACCATGGTGGTTACTGAAAAATGCGATGTTTATAGCTTTGGGGTGGTCGCACTTGAAATAATCATGGGAAGGCATCCGGGAGATCTTTCATCATTAACTTCTCTGTCTACACAAAATCCAACAGTGAATGATGTGTTGGACGCACGGCTTTCACGTCCAACAGATCGACTTGTTGAATGGGACATTGTTATGGTTCTGAGGTTGGCTTTTTCATGCTTATGTCCTAATCCTAAATCTAGGCCAACAATGGAAAGCGTGTCACAAGCATTATTAGTACGCAGGAAGCCACTACCCAGGCCTCTTCACTTGATTTCACTATTAGAGCTGTTGAGTCGGCAGACATTTTTGATGAATTAA

Network for GWHGAAZE024314

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	165	224	1.20E-08
PF00069.26	Pkinase	360	620	1.50E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.126
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.493
	SRR3591709	Stem	5.190
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.697
	SRR3591712	Green floral bud	0.105
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.302
	SRR8316896	Juvenile bud stage	0.170
	SRR8316897	Juvenile bud stage	0.383
	SRR8316894	Third green stage	0.017
	SRR8316900	Third green stage	0.064
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.239
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.028
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.074
	SRR8316908	Gold flowering stage	0.163
SRP132670	SRR6706286	Control	0.019
	SRR6706287	Light intensity 50%	0.059
	SRR6706288	Light intensity 20%	0.045
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.050
	CNS0095593	Slightly white alabastrum(diploid) 2	0.298
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.081
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.110
	CNS0095603	Golden flower (diploid) 3	0.046
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.008
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.167
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.120
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.018
	CNS0095613	Golden flower (tetraploid) 1	0.034
	CNS0095614	Golden flower (tetraploid) 2	0.152
	CNS0095615	Golden flower (tetraploid) 3	0.038
CRA001975	CRR073297	Stem 1	0.075
	CRR073298	Stem 2	0.072
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.050
	CRR073301	Leaf 2	0.069
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.011
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.761
	CRR073319	Tawny withering 2	1.249
	CRR073320	Tawny withering 3	0.912