Gene detail

Detail information of GWHGAAZE024315

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006482555.1	5.3049E-178	PREDICTED: aldose 1-epimerase-like [Citrus sinensis]
COG	YP_008148073.1	2E-95	aldose 1-epimerase
trEMBL	tr\|F6H5Q1\|F6H5Q1_VITVI	3E-178	Aldose 1-epimerase {ECO:0000256\|PIRNR:PIRNR005096}
TAIR10	AT5G15140.1	1E-119	Galactose mutarotase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39896990	39901338	-
GWHAAZE00000007	mRNA	39896990	39901338	-
GWHAAZE00000007	exon	39896990	39897621	-
GWHAAZE00000007	exon	39898530	39898637	-
GWHAAZE00000007	exon	39898802	39898925	-
GWHAAZE00000007	exon	39900980	39901029	-
GWHAAZE00000007	exon	39901158	39901338	-
GWHAAZE00000007	CDS	39901158	39901338	-
GWHAAZE00000007	CDS	39900980	39901029	-
GWHAAZE00000007	CDS	39898802	39898925	-
GWHAAZE00000007	CDS	39898530	39898637	-
GWHAAZE00000007	CDS	39896990	39897621	-

Transcript Sequence
>GWHTAAZE024349 ATGTCCAATGTAAATGCATTAGTCTGTTTAATAATTGTTGTTTTTGGGGTCATTGTTGTTAATGGATCATCATTAAATAATGAAGAGGTTGGGATTTATGAGCTCAATAAAGGAGATTTCTCTGTTAAATTCACCAATTGGGGTGCTACAATTATCTCTGTTTTTCTTCCTGACAAAGATGGAAAGTTGGCTGATGTTGTTCTTGGGTATGACTCTGTTGAGGACTACAAGGATGATAAGCCCTACTTGGGTGCTCTTGTCGGACGGGTTGCTAACCGGATCGGAGGAGCCAAATTTACCTTAAACGGGACCGTTTATAATCTAGTTGCAAACGAGAAGCACAACATGCTTCATGGTGGGAAGAAAGGATTCAGTGATGTTGTTTGGAAGGTAGAGAAGCATGAGAAAGATGGTGAATCTCCAATTATCACCTTCACTTATGACAGTGCTGATGGGGAAGAAGGATTTCCCGGGGAACTTCGTGTAACTGTGACCTATTCTCTCACCGGATCATACAAATTAAGTGTAAAAATGAAAGCCAAAGCTATAAACAAAGCCACACCAGTGAACCTAGCTCAACACAGCTACTGGAACCTCGGTGGCCACAACAGTGGCAATATCCTCTCTGATGAGGTCCAGATATTTGGGTCCCACATTACTCCCACAGACAAAAACCTCATCCCAACGGGCGAAATCCGGCCCATTAAAGGAACACCGTACGATTTCCTTGAACCACAAGTCATTTCAAGCAAGATCAACGGCCTTCCTGACCTTTACGATATCAACTATGTTCTTGATGGTGATAATGGTGACAAGAAGATGAAGCCAGTAGCTAAGGTGCACAACAAGAAGAGTGGAAGAGTGATGGAGTTGTCGAGTGATGCACCCGGGGTGCAGTTTTATACGGGTAATTATCTGAAGGACTTGAAGGGCAAAGGCGGGATTGTTTATCAAGCTCATGCTGGGCTTTGTTTGGAGACTCAAGGGTTCCCGGACTCGGTGAATCACCCGAATTTTCCTTCTCAGATTGTTAATAAAGGGCAGACTTACAAGCATAAGATGTTGTATAAGTTTTCGATTAATAAGGATATGTAG

Network for GWHGAAZE024315

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01263.21	Aldose_epim	33	357	1.50E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01785	galM, GALM	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0019318	biological_process	hexose metabolic process
GO:0016853	molecular_function	isomerase activity
GO:0030246	molecular_function	carbohydrate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.289
	SRR3591706	second leaf	1.540
	SRR3591707	mature leaf	1.865
	SRR3591708	Shoot apex	1.132
	SRR3591709	Stem	2.124
	SRR3591710	White floral bud	124.922
	SRR3591711	White flower	8.122
	SRR3591712	Green floral bud	251.382
	SRR3591713	Yellow flower	26.648
SRP173429	SRR8316895	Juvenile bud stage	1.264
	SRR8316896	Juvenile bud stage	10.271
	SRR8316897	Juvenile bud stage	29.561
	SRR8316894	Third green stage	11.791
	SRR8316900	Third green stage	92.447
	SRR8316901	Third green stage	92.559
	SRR8316898	Complete white stage	1.488
	SRR8316899	Complete white stage	2.071
	SRR8316903	Complete white stage	1.081
	SRR8316902	Silver flowering stage	3.330
	SRR8316904	Silver flowering stage	4.584
	SRR8316905	Silver flowering stage	1.586
	SRR8316906	Gold flowering stage	3.662
	SRR8316907	Gold flowering stage	2.550
	SRR8316908	Gold flowering stage	16.211
SRP132670	SRR6706286	Control	54.474
	SRR6706287	Light intensity 50%	50.740
	SRR6706288	Light intensity 20%	43.602
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.888
	CNS0095593	Slightly white alabastrum(diploid) 2	39.290
	CNS0095594	Slightly white alabastrum(diploid) 3	41.374
	CNS0095595	Whole white alabastrum(diploid) 2	149.944
	CNS0095596	Whole white alabastrum(diploid) 3	155.412
	CNS0095597	Whole white alabastrum(diploid) 4	192.348
	CNS0095598	Silvery flower (diploied) 1	5.171
	CNS0095599	Silvery flower (diploied) 2	16.837
	CNS0095600	Silvery flower (diploied) 3	5.824
	CNS0095601	Golden flower (diploid) 1	11.800
	CNS0095602	Golden flower (diploid) 2	8.312
	CNS0095603	Golden flower (diploid) 3	8.780
	CNS0095604	Slightly white alabastrum(tetraploid) 1	177.452
	CNS0095605	Slightly white alabastrum(tetraploid) 2	202.134
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.227
	CNS0095607	Whole white alabastrum(tetraploid) 1	455.823
	CNS0095608	Whole white alabastrum(tetraploid) 2	550.724
	CNS0095609	Whole white alabastrum(tetraploid) 3	242.571
	CNS0095610	Silvery flower (tetraploid) 1	24.445
	CNS0095611	Silvery flower (tetraploid) 2	42.359
	CNS0095612	Silvery flower (tetraploid) 3	47.144
	CNS0095613	Golden flower (tetraploid) 1	15.469
	CNS0095614	Golden flower (tetraploid) 2	18.706
	CNS0095615	Golden flower (tetraploid) 3	26.686
CRA001975	CRR073297	Stem 1	12.326
	CRR073298	Stem 2	13.817
	CRR073299	Stem 3	8.425
	CRR073300	Leaf 1	77.297
	CRR073301	Leaf 2	57.609
	CRR073302	Leaf 3	26.542
	CRR073303	Juvenile bud 1	69.213
	CRR073304	Juvenile bud 2	84.059
	CRR073305	Juvenile bud 3	5.612
	CRR073306	Third green 1	37.633
	CRR073307	Third green 2	54.363
	CRR073308	Third green 3	36.865
	CRR073309	Second white 1	6.047
	CRR073310	Second white 2	7.854
	CRR073311	Second white 3	7.101
	CRR073312	Silver flowering 1	37.635
	CRR073313	Silver flowering 2	36.031
	CRR073314	Silver flowering 3	19.295
	CRR073315	Gold flowering 1	41.415
	CRR073316	Gold flowering 2	7.644
	CRR073317	Gold flowering 3	26.067
	CRR073318	Tawny withering 1	49.852
	CRR073319	Tawny withering 2	57.963
	CRR073320	Tawny withering 3	41.019