Gene detail

Detail information of GWHGAAZE024320

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010661027.1	0	PREDICTED: guanine nucleotide-binding protein subunit beta-2-like 1 [Vitis vinifera]
COG	YP_001870013.1	4E-14	WD-40 repeat-containing protein
trEMBL	tr\|D7SX65\|D7SX65_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22162.3}
TAIR10	AT5G25150.1	0.00000001	TBP-associated factor 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	40057166	40064893	+
GWHAAZE00000007	mRNA	40057166	40064893	+
GWHAAZE00000007	exon	40057166	40057326	+
GWHAAZE00000007	exon	40058674	40058860	+
GWHAAZE00000007	exon	40059941	40060038	+
GWHAAZE00000007	exon	40060926	40061031	+
GWHAAZE00000007	exon	40062144	40062361	+
GWHAAZE00000007	exon	40062822	40062864	+
GWHAAZE00000007	exon	40063317	40063561	+
GWHAAZE00000007	exon	40064491	40064893	+
GWHAAZE00000007	CDS	40057166	40057326	+
GWHAAZE00000007	CDS	40058674	40058860	+
GWHAAZE00000007	CDS	40059941	40060038	+
GWHAAZE00000007	CDS	40060926	40061031	+
GWHAAZE00000007	CDS	40062144	40062361	+
GWHAAZE00000007	CDS	40062822	40062864	+
GWHAAZE00000007	CDS	40063317	40063561	+
GWHAAZE00000007	CDS	40064491	40064893	+

Transcript Sequence
>GWHTAAZE024354 ATGGCCAGCCCGAATCGGAGGAGTATTACCGACCTCGACACGGACTCACTTGTACAGTGTGCAAGTTATCTGAATCTTCAAGACATCTCGAATATGGCTATGTCTTGTAAATACCTGTATCGAGTTGCCTATTCCGATTCTATCTGGCAAACCTTATTCAGGCAGCAATGGCCGCAACAAGTACCTCCATGCTTTTCAGGAAAATCAGGTGTGAGGGACTTGTATTTAGATAGGCATACTGCTTTGCGGAAGTTTAAGTTTATCGATTCTCTTGTTGCTGACTTATACTTGGATAGAAAACCTTGCAACCTTATATTTTTGGACAAAAATGATCTCACTTTCTCACAGGGTCCATTGATTCAAATGATGAAGCTTGATAGCTTTTTGAGTGGGAGTGATTCTGCAGTAACGCTTAATGATCACCATGCTAGAATTTCATGTATGAGATTCTTTCCTATTAATGAAACATCTTTCTTTCGAAGTGAGACACAGGGAAATGAAAATATCTTGGTAACTTCAAGCTGTGACCACTCAATTCGCCTATGGTGGAAGGGACATTGCCAACGATGTTTTAGAGGCCATAACGGCTCAGTCTATACACTTTCAGATAAACTATTAGGTGATGGTACTGCAAAAGTATTTGCTAGTGGAGGTGCAGACAATACTGTTCGCCTTTGGTCACTCAGCTCTAGTGGAAAGCGTGGTCACCGTGCTCTCAGGGCTACACTCTATGGTCATGAGAAACCTGTAGTACTTATGTCAGTTGCGGGGCACAAAACTTCTCTTTTGGTGAGCATGTCAAAAGATTCCAAGGTGAGGGTTTGGGATACCACAACATCATGTTCCTCTTGCTGCGTGGGAAAGACATCTGTACCTGGGGCGGCCGTGGATCTTAAATGTCACGAGTCATTGATCTATGTAGCCAGCGGTTCCTCTGTTGCTGCAGTTGATTTGAGAACGATGCAAAATGTTTTCAGTACAGAGATTCATCAACAAAGACTACATTCATTTGATGTTTTGCCCTCGAAATCCTTAATCTGCACTGGTGGAATTGGCAGGGCAACGCTTTTGGATATTCGGAGAATATCAGATTCACTAAAACCCGAACCGGTTACTGTCTTGCATGGACCGACAGGTCCAATAACACACTTACGCATGGACCCTTACAAGATAGTTACAGCGGGTCCCGAGGACAACGAGGTCGATGTGTGGGAGACCGACACTGGTAGATTAACAACTTGCTTGCCGTGCTCCTCCTTTCCTTCTAATTATGGTTGTTCTGCAATGGCAGTAGATGGGTGTCGAATTGTTACTGCTAGCTTTAATGAAGAAGAACAGCACGGCGTTTTGCGGTTTAGGGATTTTAGTAATTCTAGTTGTGAGAATGTATCGGATGATAGTGGGTCCGTTTCTAAATTCTGGGGACCACAGTCTTCTTCAGACGGATCCGACTATGGGTGA

Network for GWHGAAZE024320

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	140	182	0.28
PF00400.33	WD40	185	227	3.40E-05
PF00400.33	WD40	241	276	0.16

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.260
	SRR3591706	second leaf	2.754
	SRR3591707	mature leaf	4.720
	SRR3591708	Shoot apex	4.782
	SRR3591709	Stem	7.343
	SRR3591710	White floral bud	5.835
	SRR3591711	White flower	5.308
	SRR3591712	Green floral bud	4.775
	SRR3591713	Yellow flower	5.801
SRP173429	SRR8316895	Juvenile bud stage	3.786
	SRR8316896	Juvenile bud stage	6.377
	SRR8316897	Juvenile bud stage	4.002
	SRR8316894	Third green stage	2.175
	SRR8316900	Third green stage	7.936
	SRR8316901	Third green stage	6.822
	SRR8316898	Complete white stage	3.616
	SRR8316899	Complete white stage	11.193
	SRR8316903	Complete white stage	6.032
	SRR8316902	Silver flowering stage	4.334
	SRR8316904	Silver flowering stage	5.821
	SRR8316905	Silver flowering stage	2.170
	SRR8316906	Gold flowering stage	8.470
	SRR8316907	Gold flowering stage	7.013
	SRR8316908	Gold flowering stage	7.672
SRP132670	SRR6706286	Control	3.912
	SRR6706287	Light intensity 50%	3.922
	SRR6706288	Light intensity 20%	4.093
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.139
	CNS0095593	Slightly white alabastrum(diploid) 2	5.618
	CNS0095594	Slightly white alabastrum(diploid) 3	7.464
	CNS0095595	Whole white alabastrum(diploid) 2	6.302
	CNS0095596	Whole white alabastrum(diploid) 3	5.231
	CNS0095597	Whole white alabastrum(diploid) 4	5.469
	CNS0095598	Silvery flower (diploied) 1	6.364
	CNS0095599	Silvery flower (diploied) 2	7.117
	CNS0095600	Silvery flower (diploied) 3	11.331
	CNS0095601	Golden flower (diploid) 1	6.991
	CNS0095602	Golden flower (diploid) 2	9.261
	CNS0095603	Golden flower (diploid) 3	7.243
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.947
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.924
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.633
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.681
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.551
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.105
	CNS0095610	Silvery flower (tetraploid) 1	8.706
	CNS0095611	Silvery flower (tetraploid) 2	10.882
	CNS0095612	Silvery flower (tetraploid) 3	6.895
	CNS0095613	Golden flower (tetraploid) 1	5.711
	CNS0095614	Golden flower (tetraploid) 2	9.113
	CNS0095615	Golden flower (tetraploid) 3	6.320
CRA001975	CRR073297	Stem 1	5.395
	CRR073298	Stem 2	3.714
	CRR073299	Stem 3	3.185
	CRR073300	Leaf 1	5.283
	CRR073301	Leaf 2	5.744
	CRR073302	Leaf 3	4.413
	CRR073303	Juvenile bud 1	7.316
	CRR073304	Juvenile bud 2	3.836
	CRR073305	Juvenile bud 3	2.511
	CRR073306	Third green 1	2.709
	CRR073307	Third green 2	1.464
	CRR073308	Third green 3	2.161
	CRR073309	Second white 1	1.583
	CRR073310	Second white 2	2.432
	CRR073311	Second white 3	3.182
	CRR073312	Silver flowering 1	1.763
	CRR073313	Silver flowering 2	2.249
	CRR073314	Silver flowering 3	2.691
	CRR073315	Gold flowering 1	2.889
	CRR073316	Gold flowering 2	3.835
	CRR073317	Gold flowering 3	1.658
	CRR073318	Tawny withering 1	2.560
	CRR073319	Tawny withering 2	5.128
	CRR073320	Tawny withering 3	3.892