Gene detail

Detail information of GWHGAAZE024322

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007032454.1	High mobility group isoform 1 [Theobroma cacao]
Swissprot	tr\|O04235\|SSRP1_VICFA	FACT complex subunit SSRP1
trEMBL	tr\|A0A061EEG1\|A0A061EEG1_THECC	High mobility group isoform 1 {ECO:0000313\|EMBL:EOY03380.1}
TAIR10	AT3G28730.1	high mobility group

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	40076249	40082835	+
GWHAAZE00000007	mRNA	40076249	40082835	+
GWHAAZE00000007	exon	40076249	40076410	+
GWHAAZE00000007	exon	40077100	40077285	+
GWHAAZE00000007	exon	40078397	40078502	+
GWHAAZE00000007	exon	40078824	40078960	+
GWHAAZE00000007	exon	40079151	40079234	+
GWHAAZE00000007	exon	40079316	40079410	+
GWHAAZE00000007	exon	40079494	40079602	+
GWHAAZE00000007	exon	40079769	40079855	+
GWHAAZE00000007	exon	40079951	40080043	+
GWHAAZE00000007	exon	40080155	40080352	+
GWHAAZE00000007	exon	40080630	40080775	+
GWHAAZE00000007	exon	40080857	40081007	+
GWHAAZE00000007	exon	40081865	40081963	+
GWHAAZE00000007	exon	40082059	40082241	+
GWHAAZE00000007	exon	40082517	40082595	+
GWHAAZE00000007	exon	40082708	40082835	+
GWHAAZE00000007	five_prime_UTR	40076249	40076356	+
GWHAAZE00000007	CDS	40076357	40076410	+
GWHAAZE00000007	CDS	40077100	40077285	+
GWHAAZE00000007	CDS	40078397	40078502	+
GWHAAZE00000007	CDS	40078824	40078960	+
GWHAAZE00000007	CDS	40079151	40079234	+
GWHAAZE00000007	CDS	40079316	40079410	+
GWHAAZE00000007	CDS	40079494	40079602	+
GWHAAZE00000007	CDS	40079769	40079855	+
GWHAAZE00000007	CDS	40079951	40080043	+
GWHAAZE00000007	CDS	40080155	40080352	+
GWHAAZE00000007	CDS	40080630	40080775	+
GWHAAZE00000007	CDS	40080857	40081007	+
GWHAAZE00000007	CDS	40081865	40081963	+
GWHAAZE00000007	CDS	40082059	40082241	+
GWHAAZE00000007	CDS	40082517	40082595	+
GWHAAZE00000007	CDS	40082708	40082835	+

Transcript Sequence
>GWHTAAZE024356 CATTAATAGTTTCGCGCCACAGCAGAGAATAAGCGCAATACGCATCCCCCCACCTCCTATATAAACCCCTCTTCACTTCGTTGTCAGCATTTCAAGCAATTCGTAGCCATGGCAGATGGGCACTTGTTCAACAATATCTCTCTCGGTGGCCGAGGCGGCACTAGCCCAGGTCAAATTAAAATTCATTCGGGGGGTATTGTGTGGAAGAAACAAGGGGGTGGTAAGGCTGTGGAAGTGGATAAGTCTGATATAGTTGGACTTACATGGATGAAGGTGCCACGAACAAATCAGCTTGGTGTACGGACTAGAGATGGTCTCAAGTATAAATTCACCGGCTTCCGTGACCAGGATGTCACTAGTCTCACCAATTTTTTTCAGAGCTCTTGTGGATTAACACCAGAGGAAAAACAGCTTTCTCTTAGTGGCAAAAACTGGGGAGAAGTTGATTTGAACGGAAATATGCTTACTTTTCTTGTTGGTTCAAAGCAAGCATTTGAGGTATCTTTAGCAGATGTATCCCAAACGCAGCTTCAAGGCAAAAATGATGTCATGTTGGAGTTCCATGTAGATGATACAACGGGAGCTAACGAGAAAGATTCATTAATGGAGATAAGCTTTCACATACCAAACTCCAACACTCAGTTTGTCGGCGACGAAAATCGCCCTCCTGCTCAAGTCTTTCGTGACAAAATTGTGTCAATGGCGGACGTTGGCACAGGGGTTGAAGAATCTGTTGTCACATTTGAGGGGATTGCAATTCTTACTCCAAGGGGGCGCTACAACGTCGAACTTCATCTTTCATTTTTACGGCTTCAAGGGCTAGCGAATGATTTCAAGATTCAGTACAGCAGTGTTGTTCGGCTCTTTTTACTGCCGAAGTCTAACCAACCACATACATTTGTGGTTGTTACTCTCGATCCCCCAATCCGTAAAGGCCAAACACTATACCCACATATTGTATTGCAGTTTGAAACTGATTATGTTGTGGAAAGCACTTTGTCTTTGAACGATGATCTTTTGATGACAAAGTACAAGGAGAAGTTAGAACCTTCTTACAAGGGACTCATTCATGAAGTGTTCATACTGATATTGCGTGGCTTATCCGGTGCCAAAGTCACTAGACCAGGAAAGTTCCGCAGCTGTCTGGATGGTTATGCTGTGAAGTCGTCATTGAAAGCTGAAGATGGAGTTCTCTACCCACTTGAAAAGAGCTTTTTCTTCTTACCGAAACCTCCGACCCTTATTCTTCATGATGAGATTGATTATGTGGAGTTTGAGAGGCATGTTGCTGGAGGTTCGAATATGCATTACTTTGATCTTCTTATCAGACTGAAGACTGAACAAGAGCATCTATTTCGCAACATTCAGAGAAATGAATACCACAATCTTTTTGACTTCATCAACTCAAAGGGCTTGAAAATCATGAACCTGGGAGGTGGTCTACAAACCGCAGATGGTGTAGCTGCTGTTTTGCAGAATGAGGATGATGATGCTGTCGATCCACATCTCGAGCGCATTAGGAATGAAGCTGGTGGAGAGGACAGCGACGAGGAGGACGAAGATTTTGTTGCTGGCAAGGATGACGGAGGCTCTCCTACTGACGACTCCGGGGAAGATGACTCCGATGCTAGTGTCAGTGGTGGTGAAAAGGAGAAACCTGCCAAAAAAGAATCCAAGAGAGAGCCTTCTAAAGCATCATCTTCGAGTAGGAAGAGAGCCAAAGGTGGTGATGAAGATGGCGGTTCAAAGAAGACAAAGCAGAAGAAGAAAAAGGATCCAAATGCACCCAAGAGGGCAATGAGTGGTTTCATGTACTTCTCTCAGACGGAAAGGGAGAATGTGAAGAAGACTAATCCTGGAATTGCATTCAAAGACATGGGGAGGGTTCTTGGAGAAAGATGGAATAAGATGTCAGCGGAGGAGAAAGAACCATATGAAGCAAAGGCCCGTATAGACAAGCAACGGTATAAGGACGAAATAAGTGGCTACAAGAACCAACAACCCACAATCATAGATTCGGGCAATGAATCCGACAGCTCTTAG

Network for GWHGAAZE024322

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17292.3	POB3_N	7	97	9.10E-22
PF03531.15	SSrecog	106	174	3.70E-25
PF08512.13	Rtt106	350	439	8.00E-21
PF00505.20	HMG_box	560	628	1.70E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HMG

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.006
	SRR3591706	second leaf	42.300
	SRR3591707	mature leaf	37.849
	SRR3591708	Shoot apex	70.105
	SRR3591709	Stem	55.864
	SRR3591710	White floral bud	76.734
	SRR3591711	White flower	96.589
	SRR3591712	Green floral bud	78.702
	SRR3591713	Yellow flower	86.504
SRP173429	SRR8316895	Juvenile bud stage	35.595
	SRR8316896	Juvenile bud stage	43.339
	SRR8316897	Juvenile bud stage	22.456
	SRR8316894	Third green stage	19.493
	SRR8316900	Third green stage	47.715
	SRR8316901	Third green stage	45.332
	SRR8316898	Complete white stage	23.345
	SRR8316899	Complete white stage	62.343
	SRR8316903	Complete white stage	41.507
	SRR8316902	Silver flowering stage	26.583
	SRR8316904	Silver flowering stage	29.877
	SRR8316905	Silver flowering stage	13.334
	SRR8316906	Gold flowering stage	43.279
	SRR8316907	Gold flowering stage	49.126
	SRR8316908	Gold flowering stage	52.050
SRP132670	SRR6706286	Control	47.185
	SRR6706287	Light intensity 50%	46.523
	SRR6706288	Light intensity 20%	49.071
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.632
	CNS0095593	Slightly white alabastrum(diploid) 2	29.211
	CNS0095594	Slightly white alabastrum(diploid) 3	32.607
	CNS0095595	Whole white alabastrum(diploid) 2	30.270
	CNS0095596	Whole white alabastrum(diploid) 3	23.662
	CNS0095597	Whole white alabastrum(diploid) 4	25.859
	CNS0095598	Silvery flower (diploied) 1	49.494
	CNS0095599	Silvery flower (diploied) 2	41.805
	CNS0095600	Silvery flower (diploied) 3	55.054
	CNS0095601	Golden flower (diploid) 1	45.618
	CNS0095602	Golden flower (diploid) 2	49.322
	CNS0095603	Golden flower (diploid) 3	50.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.508
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.627
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.825
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.216
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.573
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.574
	CNS0095610	Silvery flower (tetraploid) 1	55.431
	CNS0095611	Silvery flower (tetraploid) 2	51.125
	CNS0095612	Silvery flower (tetraploid) 3	41.703
	CNS0095613	Golden flower (tetraploid) 1	33.849
	CNS0095614	Golden flower (tetraploid) 2	45.994
	CNS0095615	Golden flower (tetraploid) 3	27.730
CRA001975	CRR073297	Stem 1	49.136
	CRR073298	Stem 2	47.462
	CRR073299	Stem 3	46.488
	CRR073300	Leaf 1	42.724
	CRR073301	Leaf 2	40.509
	CRR073302	Leaf 3	40.121
	CRR073303	Juvenile bud 1	37.006
	CRR073304	Juvenile bud 2	31.773
	CRR073305	Juvenile bud 3	43.606
	CRR073306	Third green 1	13.243
	CRR073307	Third green 2	13.294
	CRR073308	Third green 3	17.660
	CRR073309	Second white 1	18.085
	CRR073310	Second white 2	22.716
	CRR073311	Second white 3	21.480
	CRR073312	Silver flowering 1	17.969
	CRR073313	Silver flowering 2	14.761
	CRR073314	Silver flowering 3	18.887
	CRR073315	Gold flowering 1	20.141
	CRR073316	Gold flowering 2	27.562
	CRR073317	Gold flowering 3	14.653
	CRR073318	Tawny withering 1	29.971
	CRR073319	Tawny withering 2	31.993
	CRR073320	Tawny withering 3	34.042