Detail information of GWHGAAZE024323


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009599825.13.3928E-175PREDICTED: probable pectate lyase P59 isoform X1 [Nicotiana tomentosiformis]
COGYP_001628843.15E-30hypothetical protein Bpet0241
Swissprottr|P15722|PLY59_SOLLC3E-169Probable pectate lyase P59 (Precursor)
trEMBLtr|A0A068U238|A0A068U238_COFCA9E-172Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT5G15110.14E-133Pectate lyase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4008441340085696-
GWHAAZE00000007mRNA4008441340085696-
GWHAAZE00000007exon4008441340084880-
GWHAAZE00000007exon4008498340085696-
GWHAAZE00000007CDS4008498340085696-
GWHAAZE00000007CDS4008441340084880-
Transcript Sequence

Network for GWHGAAZE024323

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41223093.50E-23
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.708
SRR3591706second leaf0.091
SRR3591707mature leaf0.638
SRR3591708Shoot apex1.848
SRR3591709Stem8.185
SRR3591710White floral bud1439.788
SRR3591711White flower69.631
SRR3591712Green floral bud1514.703
SRR3591713Yellow flower51.702
SRP173429 SRR8316895Juvenile bud stage 175.224
SRR8316896Juvenile bud stage 533.966
SRR8316897Juvenile bud stage 231.516
SRR8316894Third green stage 175.348
SRR8316900Third green stage 789.131
SRR8316901Third green stage 844.102
SRR8316898Complete white stage 0.567
SRR8316899Complete white stage 6.801
SRR8316903Complete white stage 1.895
SRR8316902Silver flowering stage12.702
SRR8316904Silver flowering stage25.657
SRR8316905Silver flowering stage7.824
SRR8316906Gold flowering stage 4.498
SRR8316907Gold flowering stage 1.656
SRR8316908Gold flowering stage 1.896
SRP132670SRR6706286Control450.831
SRR6706287Light intensity 50%467.410
SRR6706288Light intensity 20%423.178
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11153.301
CNS0095593Slightly white alabastrum(diploid) 2911.834
CNS0095594Slightly white alabastrum(diploid) 31478.022
CNS0095595Whole white alabastrum(diploid) 21973.741
CNS0095596Whole white alabastrum(diploid) 32389.113
CNS0095597Whole white alabastrum(diploid) 42553.577
CNS0095598Silvery flower (diploied) 158.681
CNS0095599Silvery flower (diploied) 2218.246
CNS0095600Silvery flower (diploied) 344.573
CNS0095601Golden flower (diploid) 170.355
CNS0095602Golden flower (diploid) 235.518
CNS0095603Golden flower (diploid) 336.370
CNS0095604Slightly white alabastrum(tetraploid) 11743.525
CNS0095605Slightly white alabastrum(tetraploid) 22141.774
CNS0095606Slightly white alabastrum(tetraploid) 31.954
CNS0095607Whole white alabastrum(tetraploid) 13162.440
CNS0095608Whole white alabastrum(tetraploid) 23209.781
CNS0095609Whole white alabastrum(tetraploid) 31396.738
CNS0095610Silvery flower (tetraploid) 129.161
CNS0095611Silvery flower (tetraploid) 2139.032
CNS0095612Silvery flower (tetraploid) 3334.104
CNS0095613Golden flower (tetraploid) 170.087
CNS0095614Golden flower (tetraploid) 215.717
CNS0095615Golden flower (tetraploid) 3187.158
CRA001975CRR073297Stem 1234.304
CRR073298Stem 2239.593
CRR073299Stem 3132.995
CRR073300Leaf 1684.828
CRR073301Leaf 2484.924
CRR073302Leaf 3289.115
CRR073303Juvenile bud 1559.934
CRR073304Juvenile bud 2438.792
CRR073305Juvenile bud 342.047
CRR073306Third green 1182.811
CRR073307Third green 2214.797
CRR073308Third green 3215.631
CRR073309Second white 14.335
CRR073310Second white 241.986
CRR073311Second white 335.595
CRR073312Silver flowering 1174.786
CRR073313Silver flowering 2149.028
CRR073314Silver flowering 3111.430
CRR073315Gold flowering 1187.391
CRR073316Gold flowering 262.031
CRR073317Gold flowering 332.960
CRR073318Tawny withering 1220.731
CRR073319Tawny withering 2205.739
CRR073320Tawny withering 3188.690