Gene detail

Detail information of GWHGAAZE024326

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010066949.1	8.1006E-139	PREDICTED: pectate lyase [Eucalyptus grandis]
COG	YP_001628843.1	6E-19	hypothetical protein Bpet0241
Swissprot	tr\|P15722\|PLY59_SOLLC	9E-138	Probable pectate lyase P59 (Precursor)
trEMBL	tr\|A0A059BFL8\|A0A059BFL8_EUCGR	3E-139	Pectate lyase {ECO:0000256\|RuleBase:RU361123}
TAIR10	AT5G15110.1	6E-97	Pectate lyase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	40098406	40100954	-
GWHAAZE00000007	mRNA	40098406	40100954	-
GWHAAZE00000007	exon	40098406	40098769	-
GWHAAZE00000007	exon	40099799	40100113	-
GWHAAZE00000007	exon	40100758	40100954	-
GWHAAZE00000007	CDS	40100758	40100954	-
GWHAAZE00000007	CDS	40099799	40100113	-
GWHAAZE00000007	CDS	40098406	40098769	-

Transcript Sequence
>GWHTAAZE024360 ATGGATGGGCCCCAGGTTCATATATGTCTCTTTTTGTTTCTTTTTTTGGCTCCAACAATTCCCACTCTTACGGCTAACATAGCCCACATTGATGAGTATTGGCAAAAGCGACTAGAGGAGGCGGATAAGTACGCTGCCAATTCCTATGAGCCGAATCCCGAAAATGTCACCTCTCATCTTAATGAACAAGTCCACAAGGTCCTAAAAGAATCAAAAGGAAACAGCAGTAGAAGGCATCTTGGCAACAAACATTGGGATGGTCCATGCATGGTCACTAACCCAATCGACAGGTGCTGGAGATGCCAGCCCAATTGGGCTAAAAGTCGAAAGCGGCTAGCCGATTGCGTCCTTGGATTCGGCCGCAAGACCACCGGTGGCAAGGATGGCCCATTCTACGTCGTGACTGATTCGTCAGATGACGACATGGTTAACCCTAAGCCTGGAACCCTTCGCCACGCAGTGATCCAGAAAGGACCACTCTGGATCATATTCAAAAGCAACATGTTCATCAGGCTAAACCAAGAGTTGATCGTGCAAAGCGATAAGACAATTGATGGTCGTGGTGCTAACGTCCACATTGCTTATGGTGCTGGAATTATGATGCAAGGGATTAAGAATGTCATCATTCATGGCCTTCATGTTCACGACATTGTTTCAGGTAGCGGTGGAATGATTAGGGATGCAGTTGATCATTACGGGTTCAGGACACAGAGCGACGGAGATGGTATTTCTATCTTTACATCTTCAGACATTTGGCTCGATCACATCTCTATGTGGAAGTGCACCGATGGTCTCATTGATGCCGTTGAGGGATCCACTGGCATCACCATTTCAAACTGTCACTTCACTGACCATAATGACGTAAGATCTGTTTGA

Network for GWHGAAZE024326

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04431.14	Pec_lyase_N	26	80	2.80E-20
PF00544.20	Pectate_lyase_4	175	287	4.70E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01728	pel	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0030570	molecular_function	pectate lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.357
	SRR3591709	Stem	2.974
	SRR3591710	White floral bud	379.161
	SRR3591711	White flower	17.526
	SRR3591712	Green floral bud	249.478
	SRR3591713	Yellow flower	12.836
SRP173429	SRR8316895	Juvenile bud stage	6.671
	SRR8316896	Juvenile bud stage	18.939
	SRR8316897	Juvenile bud stage	12.061
	SRR8316894	Third green stage	16.088
	SRR8316900	Third green stage	143.095
	SRR8316901	Third green stage	127.973
	SRR8316898	Complete white stage	0.147
	SRR8316899	Complete white stage	1.099
	SRR8316903	Complete white stage	0.562
	SRR8316902	Silver flowering stage	4.938
	SRR8316904	Silver flowering stage	8.794
	SRR8316905	Silver flowering stage	3.210
	SRR8316906	Gold flowering stage	1.024
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.552
SRP132670	SRR6706286	Control	123.122
	SRR6706287	Light intensity 50%	133.332
	SRR6706288	Light intensity 20%	120.282
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	114.476
	CNS0095593	Slightly white alabastrum(diploid) 2	92.706
	CNS0095594	Slightly white alabastrum(diploid) 3	123.453
	CNS0095595	Whole white alabastrum(diploid) 2	377.007
	CNS0095596	Whole white alabastrum(diploid) 3	444.989
	CNS0095597	Whole white alabastrum(diploid) 4	562.517
	CNS0095598	Silvery flower (diploied) 1	20.754
	CNS0095599	Silvery flower (diploied) 2	62.639
	CNS0095600	Silvery flower (diploied) 3	17.784
	CNS0095601	Golden flower (diploid) 1	21.629
	CNS0095602	Golden flower (diploid) 2	13.833
	CNS0095603	Golden flower (diploid) 3	13.321
	CNS0095604	Slightly white alabastrum(tetraploid) 1	172.553
	CNS0095605	Slightly white alabastrum(tetraploid) 2	182.536
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.412
	CNS0095607	Whole white alabastrum(tetraploid) 1	490.892
	CNS0095608	Whole white alabastrum(tetraploid) 2	643.322
	CNS0095609	Whole white alabastrum(tetraploid) 3	244.251
	CNS0095610	Silvery flower (tetraploid) 1	7.666
	CNS0095611	Silvery flower (tetraploid) 2	41.928
	CNS0095612	Silvery flower (tetraploid) 3	105.019
	CNS0095613	Golden flower (tetraploid) 1	13.398
	CNS0095614	Golden flower (tetraploid) 2	3.021
	CNS0095615	Golden flower (tetraploid) 3	62.811
CRA001975	CRR073297	Stem 1	20.667
	CRR073298	Stem 2	21.128
	CRR073299	Stem 3	9.393
	CRR073300	Leaf 1	197.275
	CRR073301	Leaf 2	107.958
	CRR073302	Leaf 3	56.685
	CRR073303	Juvenile bud 1	173.120
	CRR073304	Juvenile bud 2	112.157
	CRR073305	Juvenile bud 3	20.063
	CRR073306	Third green 1	89.562
	CRR073307	Third green 2	115.990
	CRR073308	Third green 3	98.049
	CRR073309	Second white 1	2.310
	CRR073310	Second white 2	18.400
	CRR073311	Second white 3	21.821
	CRR073312	Silver flowering 1	99.657
	CRR073313	Silver flowering 2	86.067
	CRR073314	Silver flowering 3	55.575
	CRR073315	Gold flowering 1	77.321
	CRR073316	Gold flowering 2	22.304
	CRR073317	Gold flowering 3	25.154
	CRR073318	Tawny withering 1	85.842
	CRR073319	Tawny withering 2	89.750
	CRR073320	Tawny withering 3	84.530