Gene detail

Detail information of GWHGAAZE024327

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010087805.1	1.98E-174	Mitochondrial outer membrane protein porin of 34 kDa [Morus notabilis]
Swissprot	tr\|P42055\|VDAC1_SOLTU	1E-174	Mitochondrial outer membrane protein porin of 34 kDa
trEMBL	tr\|W9QZM5\|W9QZM5_9ROSA	7E-175	Mitochondrial outer membrane protein porin of 34 kDa {ECO:0000313\|EMBL:EXB30112.1}
TAIR10	AT3G01280.1	3E-116	voltage dependent anion channel 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	40110048	40114637	+
GWHAAZE00000007	mRNA	40110048	40114637	+
GWHAAZE00000007	exon	40110048	40110096	+
GWHAAZE00000007	exon	40110903	40110970	+
GWHAAZE00000007	exon	40111929	40112039	+
GWHAAZE00000007	exon	40113121	40113207	+
GWHAAZE00000007	exon	40113738	40113946	+
GWHAAZE00000007	exon	40114331	40114637	+
GWHAAZE00000007	CDS	40110048	40110096	+
GWHAAZE00000007	CDS	40110903	40110970	+
GWHAAZE00000007	CDS	40111929	40112039	+
GWHAAZE00000007	CDS	40113121	40113207	+
GWHAAZE00000007	CDS	40113738	40113946	+
GWHAAZE00000007	CDS	40114331	40114637	+

Transcript Sequence
>GWHTAAZE024361 ATGGCTAAAGGCCCAGGTCTTTACACTGGCATCGGCAAGCAAGCTCGAGATCTTCTCTACAAGGATTACCAGAGCGACCACAAGTTTACAATCACAACCTTCTCACCAACTGGAGTTGCTATCGCATCATCTGCAACAAAGAAAGGCGACCTATTTCTGGCTGACGTCAATACCCAGTTGAAAAACAAGAACATCACTACTGATATAAAAGTGGACACAGGCTCTAATCTGTTCACAACTATCACAGTGGATGAACCTGCTCCAGGGCTGAAGACAATACTAAGCTTCAAAGTTCCTGATCAAAGGTCTGGCAAGCTGGAACTTCAATACTTGCATGACTATGCGGGGATCAGCACAAGTGTTGGTTTGACAGCAAACCCCATCATCAACTTTTCGGGTGTGGTGGGAACTAATGTTGCCTCAATTGGAACTGATGTCTCCTTTGACACCAAATTGGGAAACTTCACCAAATGCAATGCTGCAGCGAGCTTCCGAAATGCAGACCTTGTTGCTTCATTGACCTTGAATGACAAGGGTGACAGCTTGATTGCGTCCTACTACCACACCGTGAGCCCTGTGACCAACACAGCCGTAGGTGCAGAGGTAACCCACAGCTTCTCAACAAACGAGAACACCATCACCCTTGGCACTCAGCACGCTTTGGACCCATTGACCACGGTCAAGGCTCGGGTCAACAACTTTGGCAAGGCCAGCGCCCTCATCCAGCATGAGTGGCGCCCCAAGTCCCTCTTCACCATATCGGGCGAGGTAGACACCAAGGCTATTGACAAGACGGCCAAGATTGGGTTGGCCTTGGCTCTCAAGCCATAA

Network for GWHGAAZE024327

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01459.23	Porin_3	5	269	2.30E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15040	VDAC2	Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Ferroptosis	map04216
		Necroptosis	map04217
		Cellular senescence	map04218
		NOD-like receptor signaling pathway	map04621
		Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0098656	biological_process	anion transmembrane transport
GO:0005741	cellular_component	mitochondrial outer membrane
GO:0008308	molecular_function	voltage-gated anion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	244.554
	SRR3591706	second leaf	166.453
	SRR3591707	mature leaf	147.254
	SRR3591708	Shoot apex	263.627
	SRR3591709	Stem	147.906
	SRR3591710	White floral bud	177.918
	SRR3591711	White flower	255.486
	SRR3591712	Green floral bud	367.383
	SRR3591713	Yellow flower	227.641
SRP173429	SRR8316895	Juvenile bud stage	130.477
	SRR8316896	Juvenile bud stage	183.004
	SRR8316897	Juvenile bud stage	118.233
	SRR8316894	Third green stage	94.513
	SRR8316900	Third green stage	391.939
	SRR8316901	Third green stage	352.490
	SRR8316898	Complete white stage	106.367
	SRR8316899	Complete white stage	245.734
	SRR8316903	Complete white stage	127.352
	SRR8316902	Silver flowering stage	132.406
	SRR8316904	Silver flowering stage	132.531
	SRR8316905	Silver flowering stage	63.507
	SRR8316906	Gold flowering stage	213.143
	SRR8316907	Gold flowering stage	249.027
	SRR8316908	Gold flowering stage	232.061
SRP132670	SRR6706286	Control	312.436
	SRR6706287	Light intensity 50%	311.664
	SRR6706288	Light intensity 20%	331.825
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	233.321
	CNS0095593	Slightly white alabastrum(diploid) 2	242.285
	CNS0095594	Slightly white alabastrum(diploid) 3	198.737
	CNS0095595	Whole white alabastrum(diploid) 2	282.944
	CNS0095596	Whole white alabastrum(diploid) 3	307.913
	CNS0095597	Whole white alabastrum(diploid) 4	248.557
	CNS0095598	Silvery flower (diploied) 1	153.618
	CNS0095599	Silvery flower (diploied) 2	160.115
	CNS0095600	Silvery flower (diploied) 3	185.912
	CNS0095601	Golden flower (diploid) 1	123.060
	CNS0095602	Golden flower (diploid) 2	166.323
	CNS0095603	Golden flower (diploid) 3	163.456
	CNS0095604	Slightly white alabastrum(tetraploid) 1	329.641
	CNS0095605	Slightly white alabastrum(tetraploid) 2	284.332
	CNS0095606	Slightly white alabastrum(tetraploid) 3	224.314
	CNS0095607	Whole white alabastrum(tetraploid) 1	361.133
	CNS0095608	Whole white alabastrum(tetraploid) 2	399.855
	CNS0095609	Whole white alabastrum(tetraploid) 3	365.764
	CNS0095610	Silvery flower (tetraploid) 1	168.466
	CNS0095611	Silvery flower (tetraploid) 2	185.790
	CNS0095612	Silvery flower (tetraploid) 3	190.374
	CNS0095613	Golden flower (tetraploid) 1	110.850
	CNS0095614	Golden flower (tetraploid) 2	128.265
	CNS0095615	Golden flower (tetraploid) 3	105.826
CRA001975	CRR073297	Stem 1	213.734
	CRR073298	Stem 2	205.016
	CRR073299	Stem 3	285.259
	CRR073300	Leaf 1	262.600
	CRR073301	Leaf 2	281.189
	CRR073302	Leaf 3	377.126
	CRR073303	Juvenile bud 1	347.238
	CRR073304	Juvenile bud 2	314.081
	CRR073305	Juvenile bud 3	288.466
	CRR073306	Third green 1	174.285
	CRR073307	Third green 2	181.052
	CRR073308	Third green 3	166.298
	CRR073309	Second white 1	275.297
	CRR073310	Second white 2	210.273
	CRR073311	Second white 3	181.431
	CRR073312	Silver flowering 1	200.160
	CRR073313	Silver flowering 2	258.942
	CRR073314	Silver flowering 3	221.302
	CRR073315	Gold flowering 1	215.560
	CRR073316	Gold flowering 2	190.036
	CRR073317	Gold flowering 3	150.559
	CRR073318	Tawny withering 1	203.041
	CRR073319	Tawny withering 2	197.190
	CRR073320	Tawny withering 3	199.186