Detail information of GWHGAAZE024330


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009631792.17.73907E-75PREDICTED: putative F-box protein At3g16210 [Nicotiana tomentosiformis]
Swissprottr|Q9LU24|FB145_ARATH2E-18Putative F-box protein At3g16210
trEMBLtr|M0ZS94|M0ZS94_SOLTU4E-73Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400006971}
TAIR10AT3G16210.12E-10F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4014378140144962+
GWHAAZE00000007mRNA4014378140144962+
GWHAAZE00000007exon4014378140144962+
GWHAAZE00000007CDS4014378140144962+
Transcript Sequence

Network for GWHGAAZE024330

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box7456.30E-10
PF07734.14FBA_12113391.20E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.241
SRR3591706second leaf4.125
SRR3591707mature leaf5.992
SRR3591708Shoot apex8.384
SRR3591709Stem5.089
SRR3591710White floral bud8.180
SRR3591711White flower6.470
SRR3591712Green floral bud7.518
SRR3591713Yellow flower3.978
SRP173429 SRR8316895Juvenile bud stage 2.783
SRR8316896Juvenile bud stage 4.107
SRR8316897Juvenile bud stage 1.531
SRR8316894Third green stage 1.758
SRR8316900Third green stage 4.811
SRR8316901Third green stage 5.194
SRR8316898Complete white stage 1.721
SRR8316899Complete white stage 5.791
SRR8316903Complete white stage 5.423
SRR8316902Silver flowering stage1.902
SRR8316904Silver flowering stage2.550
SRR8316905Silver flowering stage1.145
SRR8316906Gold flowering stage 4.086
SRR8316907Gold flowering stage 4.391
SRR8316908Gold flowering stage 3.007
SRP132670SRR6706286Control1.819
SRR6706287Light intensity 50%2.559
SRR6706288Light intensity 20%2.438
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.584
CNS0095593Slightly white alabastrum(diploid) 25.236
CNS0095594Slightly white alabastrum(diploid) 35.602
CNS0095595Whole white alabastrum(diploid) 24.304
CNS0095596Whole white alabastrum(diploid) 34.833
CNS0095597Whole white alabastrum(diploid) 44.011
CNS0095598Silvery flower (diploied) 14.022
CNS0095599Silvery flower (diploied) 24.244
CNS0095600Silvery flower (diploied) 35.106
CNS0095601Golden flower (diploid) 15.938
CNS0095602Golden flower (diploid) 27.623
CNS0095603Golden flower (diploid) 36.720
CNS0095604Slightly white alabastrum(tetraploid) 19.278
CNS0095605Slightly white alabastrum(tetraploid) 28.226
CNS0095606Slightly white alabastrum(tetraploid) 318.231
CNS0095607Whole white alabastrum(tetraploid) 16.065
CNS0095608Whole white alabastrum(tetraploid) 24.347
CNS0095609Whole white alabastrum(tetraploid) 37.841
CNS0095610Silvery flower (tetraploid) 17.227
CNS0095611Silvery flower (tetraploid) 29.694
CNS0095612Silvery flower (tetraploid) 35.431
CNS0095613Golden flower (tetraploid) 15.006
CNS0095614Golden flower (tetraploid) 28.222
CNS0095615Golden flower (tetraploid) 36.403
CRA001975CRR073297Stem 14.381
CRR073298Stem 24.646
CRR073299Stem 34.818
CRR073300Leaf 13.286
CRR073301Leaf 24.132
CRR073302Leaf 33.087
CRR073303Juvenile bud 12.540
CRR073304Juvenile bud 22.259
CRR073305Juvenile bud 32.651
CRR073306Third green 11.541
CRR073307Third green 21.369
CRR073308Third green 31.424
CRR073309Second white 11.691
CRR073310Second white 22.396
CRR073311Second white 33.149
CRR073312Silver flowering 11.784
CRR073313Silver flowering 22.083
CRR073314Silver flowering 33.671
CRR073315Gold flowering 10.964
CRR073316Gold flowering 22.126
CRR073317Gold flowering 31.600
CRR073318Tawny withering 14.816
CRR073319Tawny withering 24.516
CRR073320Tawny withering 33.490