Gene detail

Detail information of GWHGAAZE024344

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009620635.1	0	PREDICTED: serine/threonine-protein kinase D6PK [Nicotiana tomentosiformis]
COG	YP_004179918.1	2E-19	serine/threonine protein kinase
Swissprot	tr\|Q39183\|D6KL2_ARATH	0	Serine/threonine-protein kinase D6PKL2
trEMBL	tr\|A0A022R097\|A0A022R097_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU34122.1}
TAIR10	AT5G40030.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	40378459	40380689	+
GWHAAZE00000007	mRNA	40378459	40380689	+
GWHAAZE00000007	exon	40378459	40379147	+
GWHAAZE00000007	exon	40379816	40380689	+
GWHAAZE00000007	CDS	40378459	40379147	+
GWHAAZE00000007	CDS	40379816	40380689	+

Transcript Sequence
>GWHTAAZE024378 ATGAACCAAACACTCACAAGTCCCACTTTAAATGGCAAACCCAGATCCCCCATTGCCAGTTTTCAGGCCCTGAGCATGAACAGCAGTACTAGTACTGAAGTTTGTAGCAGTATCATTACTGGGTCGGATAGTAGTGGGAGTTCTACTAAAGTGAGCGAGTGTGGTGGGGTTTTGAGTGTTGAGGAGTGTGTGGATTGTGAGGAGAGTGAGAAGAGTAGTAGCTTGAGTTCTTCTAGCTATTGTAACAGTGTTAGTAACAATGCTAATGAAATTAGTTTTAGAAGCCTTTGTGCTTCAAAGCCTCATAAGGGTAATGATTCTAGATGGGATGCAATACAAATCGTGAAGGGGAAAGATGGGGATTTGGGTTTGGGGCATTTTAGGCTTTTAAAGAAACTTGGCTTTGGTGATATTGGGAGTGTGTATTTGGCTGAGTTGAGAGGGATGGGGTGTTTATTTGCCATGAAAGTGATGGATAAAGGGATGTTAGAGGGGAGAAAGAAAATGGTTAGGGCTCAAACTGAGAGGGAAATCTTGGGTTTGTTGGATCACCCTTTTCTTCCGACTCTTTATTCGCATTTCGAAACCGAAAAGTTTTCTTGTTTGCTTATGGAATTTTGCAGTGGTGGAGATCTCCATCTTCTTCGGCAGCGCCAGCCTGGGAAGCATTTTTCAGAACAAGCAGCAAGGTTTTATGTGTCCGAAGTACTTCTTGCCCTTGAGTATCTACACATGATGGGTGTAGTTTATAGGGACTTAAAACCCGAAAATGTTTTAGTTAGAGAAGATGGTCACATTATGTTATCTGATTTTGACTTATCACTAAGATGTTATTCGAATCCCACACTCGTCCAAGCCAATGCTGAACCATCTTGTACCCTCGGTTCATACTGCATCCAGCCATCGTGCATCGATCCATCATTCAAATTACCGGTTTGTGTACAACCCACTTGCTTCCAACCCTCTTGCTTTAAGCCCCGTATTTTCAAATCCAAGAATGGAAAGTTGAAAACTGAACGAACAACTTTAGTAAGTACAGATTCACTCCCTGAGCTCATAGCGGAGCCCACTGCAGCCCGGTCCATGTCATTTGTTGGGACCCATGAATACTTGGCCCCCGAAATAATTAGAGGAGATGGTCATGGAAGTGCTGTTGATTGGTGGACATTTGGTATTTTCTTGTACGAGTTACTACACGGGCGGACCCCGTTCAAAGGAAATGGAAACCGAGAGACATTATTTAATGTTGTTGGGCAATCCTTAAAATTTCCAGAGGGGCCCGCTATTAGTTCTGCTGCTAAGGATCTGATCCGGGACCTACTTGTTAAGGACCCACAAAAACGACTAGGGTACAAAAGAGGTGCCACTGAGATAAAGCAACACCCCTTTTTTGCAAGTGTTAATTGGGCTCTAATTCGAAGCTCTAGCCCGCCCGAGATCCCTAAGCCACTAGATCTTGCATTTGTTAGTCAAACGTCGAAGTCAAAATTGCCAACGAGTGAGAAAGGAGCTTCTGATTCGAATAGATCGTCGGGTCCTTACTTGGATTTCGAATTTTTCTAG

Network for GWHGAAZE024344

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	128	282	1.40E-36
PF00069.26	Pkinase	361	464	3.10E-23

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.384
	SRR3591706	second leaf	0.360
	SRR3591707	mature leaf	0.079
	SRR3591708	Shoot apex	3.824
	SRR3591709	Stem	1.673
	SRR3591710	White floral bud	0.532
	SRR3591711	White flower	0.288
	SRR3591712	Green floral bud	1.249
	SRR3591713	Yellow flower	0.141
SRP173429	SRR8316895	Juvenile bud stage	2.911
	SRR8316896	Juvenile bud stage	5.488
	SRR8316897	Juvenile bud stage	1.386
	SRR8316894	Third green stage	1.345
	SRR8316900	Third green stage	2.236
	SRR8316901	Third green stage	1.975
	SRR8316898	Complete white stage	0.041
	SRR8316899	Complete white stage	0.806
	SRR8316903	Complete white stage	0.205
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.044
	SRR8316905	Silver flowering stage	0.105
	SRR8316906	Gold flowering stage	0.129
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.108
SRP132670	SRR6706286	Control	1.926
	SRR6706287	Light intensity 50%	1.982
	SRR6706288	Light intensity 20%	2.210
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.167
	CNS0095593	Slightly white alabastrum(diploid) 2	1.682
	CNS0095594	Slightly white alabastrum(diploid) 3	3.864
	CNS0095595	Whole white alabastrum(diploid) 2	1.518
	CNS0095596	Whole white alabastrum(diploid) 3	1.575
	CNS0095597	Whole white alabastrum(diploid) 4	0.792
	CNS0095598	Silvery flower (diploied) 1	1.298
	CNS0095599	Silvery flower (diploied) 2	0.961
	CNS0095600	Silvery flower (diploied) 3	0.236
	CNS0095601	Golden flower (diploid) 1	0.578
	CNS0095602	Golden flower (diploid) 2	0.365
	CNS0095603	Golden flower (diploid) 3	0.469
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.159
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.050
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.320
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.628
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.794
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.662
	CNS0095610	Silvery flower (tetraploid) 1	0.218
	CNS0095611	Silvery flower (tetraploid) 2	0.328
	CNS0095612	Silvery flower (tetraploid) 3	0.513
	CNS0095613	Golden flower (tetraploid) 1	0.249
	CNS0095614	Golden flower (tetraploid) 2	0.077
	CNS0095615	Golden flower (tetraploid) 3	0.012
CRA001975	CRR073297	Stem 1	3.681
	CRR073298	Stem 2	4.074
	CRR073299	Stem 3	2.452
	CRR073300	Leaf 1	3.828
	CRR073301	Leaf 2	2.548
	CRR073302	Leaf 3	2.814
	CRR073303	Juvenile bud 1	0.999
	CRR073304	Juvenile bud 2	1.723
	CRR073305	Juvenile bud 3	0.964
	CRR073306	Third green 1	0.583
	CRR073307	Third green 2	0.105
	CRR073308	Third green 3	0.222
	CRR073309	Second white 1	0.064
	CRR073310	Second white 2	0.133
	CRR073311	Second white 3	0.232
	CRR073312	Silver flowering 1	0.212
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.433
	CRR073316	Gold flowering 2	0.954
	CRR073317	Gold flowering 3	1.193
	CRR073318	Tawny withering 1	1.645
	CRR073319	Tawny withering 2	1.601
	CRR073320	Tawny withering 3	1.860