Gene detail

Detail information of GWHGAAZE024355

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007034340.1	7.51279E-37	Uncharacterized protein TCM_020306 [Theobroma cacao]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	7E-18	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A061EK90\|A0A061EK90_THECC	3E-37	Uncharacterized protein {ECO:0000313\|EMBL:EOY05266.1}
TAIR10	AT3G06240.1	1E-16	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	40601316	40602389	+
GWHAAZE00000007	mRNA	40601316	40602389	+
GWHAAZE00000007	exon	40601316	40602389	+
GWHAAZE00000007	CDS	40601316	40602389	+

Transcript Sequence
>GWHTAAZE024389 ATGTGCAAGTGCGTTTGCAAGTCATGGCGTCGGTTACTTTCTGACCCTTATTTTGCCAAAATTCACATAAATCAGATCAACCAACCACAATCTCAAAAAGTTTTGCTCAGATCTTACGACGATTCCTTTTACTCCCTAGATTGTGAATCAACTCATGGTAATGCGGTGTTGCGAAAGTTTCCATTGAATGTTTCTCCTCCTTTAGATGTATTGAGTTCTTGTAATGGCTTGTTATGTGTAGCCGTACCCCACCAAAACCAAGAGAGTCCACAAAGACAATTAGTTGAAGTGGTATTGTGGAACCCAACAACGGGAGATTACAAGATGTTACCTTCTGCTAAACCCTCTGTTGACCGTCGCCAAGTTGTAGGATTTGGTTATCACCCATCGCTTGATGATTACATGATGGTAAGAATCATTACTCGTGATTTTATTGATTCTGAACAAAAATTTCGTAGAATTGAGGGTGAACACCGAGTTGATATGTACTCGTTAAGAACCAATTCCTGGAAAAGGATTCAAGACTCCCCTGGGCATGGATTTATTAGCAAAGCAGGGAGTTATGGCGCAAATGGATCTATCTACTGGGGAGGTCGGTATAGTACAGTTATTAGGTTCGACTTAAAAGGAGAGAAGTTTAGCGTATTTCCAATGCCTAATGACATAGGAGGAGGAGTTCCTAGGTGTGTGTTGACGAGAGGAGGATGCCTATGGCTTTACTACACGGTGCCATTGCCGCAATGCAATAATATTGTATTGTGGACGATGAAGGAAGATGAAAACAAGAAAGAGCAGTGGACTAAATTGATGACCATCTCTTCTACAAGGGAGAAAATAGATCGAGGTCGAGCAATCGGGCCGACTTGCTTTTTGGAGAACGGAAAACTCCTCCTGTATACAGCAAAGAGAACTTCTAAGGATGACGATTTCGAAAGATCATTAGTTATAAAGTTTGTTGTCTATGATCCCAAAAAAAGTAGCACGCCTGAAACTTTTCCTATCTATGGGATTAGTGGTTTTTGGATGTGGGAGACATATACCGAAAGTTTTGTTTCACCTAATTCTAGTTCTTAG

Network for GWHGAAZE024355

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07734.14	FBA_1	191	311	7.90E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.497
	SRR3591706	second leaf	0.130
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.175
	SRR3591709	Stem	0.183
	SRR3591710	White floral bud	0.248
	SRR3591711	White flower	0.137
	SRR3591712	Green floral bud	4.877
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.796
	SRR8316896	Juvenile bud stage	0.456
	SRR8316897	Juvenile bud stage	0.142
	SRR8316894	Third green stage	0.218
	SRR8316900	Third green stage	0.472
	SRR8316901	Third green stage	0.348
	SRR8316898	Complete white stage	0.080
	SRR8316899	Complete white stage	0.590
	SRR8316903	Complete white stage	0.109
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.062
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.026
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.097
SRP132670	SRR6706286	Control	0.123
	SRR6706287	Light intensity 50%	0.271
	SRR6706288	Light intensity 20%	0.073
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.510
	CNS0095593	Slightly white alabastrum(diploid) 2	0.723
	CNS0095594	Slightly white alabastrum(diploid) 3	0.806
	CNS0095595	Whole white alabastrum(diploid) 2	0.729
	CNS0095596	Whole white alabastrum(diploid) 3	0.407
	CNS0095597	Whole white alabastrum(diploid) 4	0.289
	CNS0095598	Silvery flower (diploied) 1	0.303
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.551
	CNS0095601	Golden flower (diploid) 1	0.126
	CNS0095602	Golden flower (diploid) 2	0.099
	CNS0095603	Golden flower (diploid) 3	0.248
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.242
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.644
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.443
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.126
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.046
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.184
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.327
	CNS0095612	Silvery flower (tetraploid) 3	0.552
	CNS0095613	Golden flower (tetraploid) 1	0.031
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.241
	CRR073298	Stem 2	0.380
	CRR073299	Stem 3	0.178
	CRR073300	Leaf 1	0.156
	CRR073301	Leaf 2	0.084
	CRR073302	Leaf 3	0.286
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.061
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.138
	CRR073307	Third green 2	0.215
	CRR073308	Third green 3	0.036
	CRR073309	Second white 1	0.305
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.039
	CRR073316	Gold flowering 2	0.318
	CRR073317	Gold flowering 3	0.079
	CRR073318	Tawny withering 1	0.361
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.295