Gene detail

Detail information of GWHGAAZE024357

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011098545.1	PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X2 [Sesamum indicum]
Swissprot	tr\|Q9LFQ3\|SNL2_ARATH	Paired amphipathic helix protein Sin3-like 2
trEMBL	tr\|A0A068U3L3\|A0A068U3L3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02173.1}
TAIR10	AT5G15020.1	SIN3-like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	40629187	40640612	+
GWHAAZE00000007	mRNA	40629187	40640612	+
GWHAAZE00000007	exon	40629187	40629230	+
GWHAAZE00000007	exon	40629728	40629901	+
GWHAAZE00000007	exon	40630206	40630389	+
GWHAAZE00000007	exon	40630476	40630574	+
GWHAAZE00000007	exon	40631271	40631435	+
GWHAAZE00000007	exon	40631761	40632049	+
GWHAAZE00000007	exon	40632883	40633019	+
GWHAAZE00000007	exon	40633872	40633947	+
GWHAAZE00000007	exon	40634028	40634057	+
GWHAAZE00000007	exon	40634509	40634738	+
GWHAAZE00000007	exon	40634851	40635005	+
GWHAAZE00000007	exon	40636276	40636403	+
GWHAAZE00000007	exon	40636756	40637010	+
GWHAAZE00000007	exon	40637903	40638387	+
GWHAAZE00000007	exon	40639630	40639730	+
GWHAAZE00000007	exon	40639808	40639946	+
GWHAAZE00000007	exon	40640059	40640199	+
GWHAAZE00000007	exon	40640502	40640612	+
GWHAAZE00000007	CDS	40629187	40629230	+
GWHAAZE00000007	CDS	40629728	40629901	+
GWHAAZE00000007	CDS	40630206	40630389	+
GWHAAZE00000007	CDS	40630476	40630574	+
GWHAAZE00000007	CDS	40631271	40631435	+
GWHAAZE00000007	CDS	40631761	40632049	+
GWHAAZE00000007	CDS	40632883	40633019	+
GWHAAZE00000007	CDS	40633872	40633947	+
GWHAAZE00000007	CDS	40634028	40634057	+
GWHAAZE00000007	CDS	40634509	40634738	+
GWHAAZE00000007	CDS	40634851	40635005	+
GWHAAZE00000007	CDS	40636276	40636403	+
GWHAAZE00000007	CDS	40636756	40637010	+
GWHAAZE00000007	CDS	40637903	40638387	+
GWHAAZE00000007	CDS	40639630	40639730	+
GWHAAZE00000007	CDS	40639808	40639946	+
GWHAAZE00000007	CDS	40640059	40640199	+
GWHAAZE00000007	CDS	40640502	40640612	+

Transcript Sequence
>GWHTAAZE024391 ATGAAAATTCATGGTTCTACCGCAACCAAACTTATATGTAGATGCTACGGGCAACCCCAAATTCCTGGAGGAGGAGGTGTTGGTGGTGGAGTTACTGCACAGAAACTCACTGCTGACGATGCATTAGCATATTTGAAGGCAGTAAGGGAGATGTTCCAAGATCAGCGGGAGAAATATGACATGTTTCTTGATGTAATGAAAGATTTTAAGTCTCAAAGAATTGACACTACTGGAGTGATAGCAAGGGTGAAAGTTTTATTTAAAGGGCATAATGATCTAATTTTTGGATTTAACACCTTCTTGCCCAAGGGTTACGAGATAACACTTGTTGATGACGAAGAGACTCCACCGAAGAAAAATGTTGAGTTTTTAGAAGCAATTAGTTTTGTGAATAAGATAAAGAAACGTTTCCAAAATGATGATCGCGTGTACAAATCTTTTCTAGCCACGTTGAACATGTACCGAAATGAGCATAAAGACATCACTGAGGTCAACCATGAGGTTGAGGAACTTTTTAAAGAGCATCCAGATTTGCTGGATGAGTTTAAAAGATTTTTGCCAGATAATTCAGCTACACAGGTCTCGGTTGGCCGTAATTCTCTTCCTCGTAATGATGAGCAGAAGACCTCTACGGTGCTCACAATGAGGCAGACACATGTGGAAAAGCGAGACAGTGTATGTGCTCCCCATAGTGCACGTGATCCAAAAATTGAGCGTTTGGAATTGGATGACAATAAAACAATGACGAAATTGCACAACGAGCAGCGGAAGCATACTGAAAAGGAGAATGGGGAACGGAGAAATTGTGATGAGGATAGCAGAGAACCCGAACACCTTAACAATAGGGACATCAAGATGCCTCAACTTCCTGAAAGAAGGAAATCGCCCCGCAAGGTTGACGCCTTTGGAGTAAATCCTGTTTTGGCCTCCGGTGATGGTAAAGATGCCTTGAAAAGCACGTTCAACCAAGAGTTCACTTTCTGTGAAAAAGTGAAGGAGAGGTTACACAATCCAGCTGATTATCAGGCATTCTTGAAGTGCCTTAATATTTATAGCACAGAAGTAATTACAAGAAAGGAATTAGAATGTTTGGTTAATGATTTACTTGGAAAATACCCTGATCTTATGGATGGGTTCAACAAGTTTTTTGAGCGCTGCGAAAGTATAGATGGACTCCTTGCTGGTATTATGAGCAAAAGGTTTACCTGGTCTTTCATTAAACCTGAAGAATCCATTTTGTTAACAGCAGAATCTATCTGCAATGAAGGAAATCTACCCAAACCAGTAGAAGTAGAGGATAAAGCCAAGGAGCAGAAGCCAAAAGAAAAAGATAGATCCAAGAGCAAGTATTCTGGGAAATCTATTCAGGAGCTTGACCTCTCTGACTGTGAACGGTGCACTCCTAGCTATAGGCTTCTTCCTGAGGATTATCCAATTCCTTCAGCAAGCCAGCGGTCAGAGCTTGGAGCTCAATTATTGAATGATCGTTGGGTATCCGTCACTTCGGGTAGTGAGGATTACTCTTTTAACCATATGCGTCGAAATCAGTACGAAGAGAACTTATTTAGATGTGAAGATGATAGATTTGAGCTAGACATGTTATTGGAGTCTGTAAAGTCAACTATTAAGTGTGGACAAGATTTATTGCACGGCATTATGGATAATTCAATCAATTCAGGGAGTCCCATCCATATTGAAGATCACTTTACAGCTCAACATTTAAGGTGCATTGAGCGTATTTATGGTGATCATGGTCTGGAGACAATAGAAATGTTACGTAGAAACCCGTCCACGGTATTGCCTGTGGTATTAACCCGTTTGAAGCAGAAAAAAGAGGAGTGGACCAAGTGTCATTCAGATTTTAACAAGGTTTGGGCAAATATTTACGCTAAAAACCATTGCAGGTCGCTTGATCACCGTAGCTTCTATTTCAAGCAACAAGACTTGAAGAACTTGAGCACAAAATCCTTGGTGGCTGAGATCAAAGAAAATGAGGAGAAAAGGCAGAAAGACGATACTGTCCTCACCGATATTGCCGCCGAAAGTAGACACCCCGCAAGTGGGAATCTTGAATTTGAATACTCTAATACCGGCATTCATGAAGATTTGCATAAGCTTATTGAGTATTCATGTGGAGAGCTATGCACTACCAAAGAACAATTGACTAAGGTTATGAGGATTTGGACTTCTTTCGTGGAGCCAATGCTGGGTGTTTTTTCTCAACCCCACAGTTCAAAGGGTACCGAATGTGTAAATGGAGATGAAAGCGCTTCACCAGATCGAGTTGATTCTTGCAGGATTAACTTTGTAAATTGCGATAATTTGGTGAAAGAAAATGGTTATTGGCTAGAAAAAGAGCTAAAGAATGCGACAACTTTGAGGCCTAGTGATAGTGCGTCCGAGGAGGGTACTGGAGCTAAGTTTAATGTTAACGAAGTACCTTCATCAGAGAAATTGTATGAAAGATTACTACTAGCTAAATTGAGTTCAACATCCACTGAAATGAAATGGGTAACTGTGAAAGATACTGGTTCGGTCAATCTCTATGACAGATTTATGAGTGCATTATATAATTTGCTTGATGGATCCATTGATAATGCAACGTTTGAGGATGACTGCCAGGCTATTATTGGTAATCATTCTTATGTCCTATTTACGTTGGACAAGTTGATATATAAGCTGGTCAAACAGCTTCAAACTGTTGCAGGTGATGAGATTGACAATAAGCTGCTTCAATTATATGAGCATGAAAATTCCCTGAAACATGATGCAGTTTATTATGAAAATGCACATGCGCTCCTTCTGGACAAGAACATATATCGATTTGAATGTTTATCGGGACTACCCCGTTTGTTAATCCAGCTGATGGATGACGTGAAGGAAAATTCTGAAGTTGTTGCAATGGCCATAGACCCCTCTTCTTGCAGATTATCTTCGCGATGA

Network for GWHGAAZE024357

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02671.22	PAH	57	101	2.90E-16
PF02671.22	PAH	143	186	2.10E-14
PF02671.22	PAH	341	383	5.20E-08
PF08295.13	Sin3_corepress	464	555	8.20E-33
PF16879.6	Sin3a_C	830	965	3.40E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K11644	SIN3A	Mitophagy - yeast	map04139
K11644	SIN3A	Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.736
	SRR3591706	second leaf	14.515
	SRR3591707	mature leaf	18.555
	SRR3591708	Shoot apex	13.535
	SRR3591709	Stem	25.496
	SRR3591710	White floral bud	30.951
	SRR3591711	White flower	32.742
	SRR3591712	Green floral bud	21.772
	SRR3591713	Yellow flower	32.787
SRP173429	SRR8316895	Juvenile bud stage	11.088
	SRR8316896	Juvenile bud stage	14.660
	SRR8316897	Juvenile bud stage	7.595
	SRR8316894	Third green stage	7.781
	SRR8316900	Third green stage	17.680
	SRR8316901	Third green stage	18.078
	SRR8316898	Complete white stage	10.414
	SRR8316899	Complete white stage	25.024
	SRR8316903	Complete white stage	20.624
	SRR8316902	Silver flowering stage	12.534
	SRR8316904	Silver flowering stage	22.507
	SRR8316905	Silver flowering stage	7.778
	SRR8316906	Gold flowering stage	28.658
	SRR8316907	Gold flowering stage	27.105
	SRR8316908	Gold flowering stage	29.562
SRP132670	SRR6706286	Control	14.443
	SRR6706287	Light intensity 50%	15.412
	SRR6706288	Light intensity 20%	16.881
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.153
	CNS0095593	Slightly white alabastrum(diploid) 2	8.560
	CNS0095594	Slightly white alabastrum(diploid) 3	7.905
	CNS0095595	Whole white alabastrum(diploid) 2	9.657
	CNS0095596	Whole white alabastrum(diploid) 3	7.621
	CNS0095597	Whole white alabastrum(diploid) 4	8.265
	CNS0095598	Silvery flower (diploied) 1	12.946
	CNS0095599	Silvery flower (diploied) 2	7.611
	CNS0095600	Silvery flower (diploied) 3	32.868
	CNS0095601	Golden flower (diploid) 1	10.595
	CNS0095602	Golden flower (diploid) 2	27.149
	CNS0095603	Golden flower (diploid) 3	26.992
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.641
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.592
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.800
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.549
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.305
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.759
	CNS0095610	Silvery flower (tetraploid) 1	27.466
	CNS0095611	Silvery flower (tetraploid) 2	25.547
	CNS0095612	Silvery flower (tetraploid) 3	28.014
	CNS0095613	Golden flower (tetraploid) 1	13.693
	CNS0095614	Golden flower (tetraploid) 2	23.108
	CNS0095615	Golden flower (tetraploid) 3	34.902
CRA001975	CRR073297	Stem 1	11.545
	CRR073298	Stem 2	10.067
	CRR073299	Stem 3	6.846
	CRR073300	Leaf 1	13.075
	CRR073301	Leaf 2	9.125
	CRR073302	Leaf 3	5.002
	CRR073303	Juvenile bud 1	7.843
	CRR073304	Juvenile bud 2	6.346
	CRR073305	Juvenile bud 3	10.537
	CRR073306	Third green 1	6.998
	CRR073307	Third green 2	4.267
	CRR073308	Third green 3	7.302
	CRR073309	Second white 1	5.154
	CRR073310	Second white 2	13.302
	CRR073311	Second white 3	14.286
	CRR073312	Silver flowering 1	8.693
	CRR073313	Silver flowering 2	7.943
	CRR073314	Silver flowering 3	9.238
	CRR073315	Gold flowering 1	3.012
	CRR073316	Gold flowering 2	5.116
	CRR073317	Gold flowering 3	1.748
	CRR073318	Tawny withering 1	6.348
	CRR073319	Tawny withering 2	6.934
	CRR073320	Tawny withering 3	6.296