Detail information of GWHGAAZE024359


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02169.10unnamed protein product [Coffea canephora]
COGYP_007144079.12E-20WD-40 repeat-containing protein
Swissprottr|O64740|SC13B_ARATH0Protein transport protein SEC13 homolog B {ECO:0000305}
trEMBLtr|M0ZLC3|M0ZLC3_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400003267}
TAIR10AT2G30050.13E-149transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4066033140661239-
GWHAAZE00000007mRNA4066033140661239-
GWHAAZE00000007exon4066033140661239-
GWHAAZE00000007CDS4066033140661239-
Transcript Sequence

Network for GWHGAAZE024359

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD408370.01
PF00400.33WD4047860.0016
PF00400.33WD40961310.066
PF00400.33WD401451920.014
PF00400.33WD402072410.0075
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K14004SEC13 RNA transport map03013
Protein processing in endoplasmic reticulummap04141
mTOR signaling pathwaymap04150

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf173.485
SRR3591706second leaf83.921
SRR3591707mature leaf78.325
SRR3591708Shoot apex132.479
SRR3591709Stem159.771
SRR3591710White floral bud180.220
SRR3591711White flower182.420
SRR3591712Green floral bud233.770
SRR3591713Yellow flower148.614
SRP173429 SRR8316895Juvenile bud stage 113.502
SRR8316896Juvenile bud stage 182.484
SRR8316897Juvenile bud stage 82.377
SRR8316894Third green stage 73.616
SRR8316900Third green stage 221.467
SRR8316901Third green stage 237.047
SRR8316898Complete white stage 82.426
SRR8316899Complete white stage 227.551
SRR8316903Complete white stage 141.403
SRR8316902Silver flowering stage73.297
SRR8316904Silver flowering stage86.069
SRR8316905Silver flowering stage46.749
SRR8316906Gold flowering stage 136.579
SRR8316907Gold flowering stage 158.595
SRR8316908Gold flowering stage 161.261
SRP132670SRR6706286Control204.360
SRR6706287Light intensity 50%202.343
SRR6706288Light intensity 20%211.772
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1223.607
CNS0095593Slightly white alabastrum(diploid) 2221.908
CNS0095594Slightly white alabastrum(diploid) 3205.842
CNS0095595Whole white alabastrum(diploid) 2194.149
CNS0095596Whole white alabastrum(diploid) 3219.257
CNS0095597Whole white alabastrum(diploid) 4189.652
CNS0095598Silvery flower (diploied) 1140.223
CNS0095599Silvery flower (diploied) 2137.889
CNS0095600Silvery flower (diploied) 3206.108
CNS0095601Golden flower (diploid) 1131.359
CNS0095602Golden flower (diploid) 2188.596
CNS0095603Golden flower (diploid) 3186.171
CNS0095604Slightly white alabastrum(tetraploid) 1193.842
CNS0095605Slightly white alabastrum(tetraploid) 2184.181
CNS0095606Slightly white alabastrum(tetraploid) 3216.709
CNS0095607Whole white alabastrum(tetraploid) 1145.871
CNS0095608Whole white alabastrum(tetraploid) 2134.099
CNS0095609Whole white alabastrum(tetraploid) 3189.087
CNS0095610Silvery flower (tetraploid) 1179.172
CNS0095611Silvery flower (tetraploid) 2173.273
CNS0095612Silvery flower (tetraploid) 3170.988
CNS0095613Golden flower (tetraploid) 1121.629
CNS0095614Golden flower (tetraploid) 2159.512
CNS0095615Golden flower (tetraploid) 3145.232
CRA001975CRR073297Stem 1246.312
CRR073298Stem 2241.160
CRR073299Stem 3294.097
CRR073300Leaf 1320.921
CRR073301Leaf 2312.091
CRR073302Leaf 3313.360
CRR073303Juvenile bud 1385.390
CRR073304Juvenile bud 2317.523
CRR073305Juvenile bud 3384.638
CRR073306Third green 1225.028
CRR073307Third green 2248.484
CRR073308Third green 3220.303
CRR073309Second white 1238.921
CRR073310Second white 2185.429
CRR073311Second white 3163.918
CRR073312Silver flowering 1187.360
CRR073313Silver flowering 2251.998
CRR073314Silver flowering 3221.173
CRR073315Gold flowering 1116.887
CRR073316Gold flowering 2133.419
CRR073317Gold flowering 3154.279
CRR073318Tawny withering 1326.254
CRR073319Tawny withering 2253.762
CRR073320Tawny withering 3332.488