Gene detail

Detail information of GWHGAAZE024362

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010091946.1	0	Mannose-1-phosphate guanyltransferase alpha-B [Morus notabilis]
COG	YP_003902244.1	2E-24	nucleotidyl transferase
Swissprot	tr\|Q941T9\|GMPP2_ORYSJ	1E-43	Probable mannose-1-phosphate guanylyltransferase 2
trEMBL	tr\|W9QPX3\|W9QPX3_9ROSA	0	Mannose-1-phosphate guanyltransferase alpha-B {ECO:0000313\|EMBL:EXB47726.1}
TAIR10	AT1G74910.2	0	ADP-glucose pyrophosphorylase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	40709559	40716334	-
GWHAAZE00000007	mRNA	40709559	40716334	-
GWHAAZE00000007	exon	40709559	40709868	-
GWHAAZE00000007	exon	40710576	40710618	-
GWHAAZE00000007	exon	40711001	40711063	-
GWHAAZE00000007	exon	40711150	40711242	-
GWHAAZE00000007	exon	40711868	40712015	-
GWHAAZE00000007	exon	40712108	40712224	-
GWHAAZE00000007	exon	40712871	40712919	-
GWHAAZE00000007	exon	40713819	40713909	-
GWHAAZE00000007	exon	40714107	40714199	-
GWHAAZE00000007	exon	40715062	40715140	-
GWHAAZE00000007	exon	40715273	40715373	-
GWHAAZE00000007	exon	40716079	40716176	-
GWHAAZE00000007	exon	40716277	40716334	-
GWHAAZE00000007	CDS	40716277	40716334	-
GWHAAZE00000007	CDS	40716079	40716176	-
GWHAAZE00000007	CDS	40715273	40715373	-
GWHAAZE00000007	CDS	40715062	40715140	-
GWHAAZE00000007	CDS	40714107	40714199	-
GWHAAZE00000007	CDS	40713819	40713909	-
GWHAAZE00000007	CDS	40712871	40712919	-
GWHAAZE00000007	CDS	40712108	40712224	-
GWHAAZE00000007	CDS	40711868	40712015	-
GWHAAZE00000007	CDS	40711150	40711242	-
GWHAAZE00000007	CDS	40711001	40711063	-
GWHAAZE00000007	CDS	40710576	40710618	-
GWHAAZE00000007	CDS	40709768	40709868	-
GWHAAZE00000007	three_prime_UTR	40709559	40709767	-

Transcript Sequence
>GWHTAAZE024396 ATGGAGTCCTCGGAGGAGAAGGTGGTCGCCGTCATCATGATGGGTGGACCCACTAAAGGTACTAGATTTCGACCCCTTTCCTTCAATACTCCAAAGCCCCTTTTCCCTCTTGCTGGCCAGCCTATGGTTCACCACCCTATTTCTGCTTGTAAAAGGATACCAAATTTGGCGCAAATATTTCTCATTGGCTTCTACGAAGAGCGTGAATTCACACTATACGTGTCTTCCATCTCTAATGAACTTAAAGTCCCCGTCAGATACTTGAAAGAAGATAAGCCCCATGGTTCAGCTGGTGGTCTTTATTACTTTAGAGATCTCATCATGGAAGACAGCCCGGTTTCTGCTGAATCAGCGAACCAATTTGGTGAGTTGGTTGCTGATCCAATCACCAATGAGTTGTTGCATTACACGGAGAAACCCGAGACTTTTGTAAGTGACTTGATAAATTGTGGCGTTTACGTCTTCACCCCAGAAATTTTTAATGCTATCCAAGATGTATCCTCACATCGGGATGACAAAGCTAATCTACGTCGTGTGTCCAGCTTTGAAGCCCTCCAGTTGGCAACAAGGAACACTCCTTCGGGTTTTGTCAGATTAGACCAAGATATCCTCTCACCTCTTGCTGGAAAGAAGCAATTATATACCTATGAGACTATGGAGTTTTGGGAACAAATAAAAACTCCTGGAATTTCACTAAAATGTTCAGCTCTATATCTTGCCCAATTCCGATTTACCTCTCCCCATCTCCTTGCTGGTGGAGATGGCACCAAGAGTGCTACAATTATTGGTGACGTTTTTGTTCATCCATCGGCAAAAGTACATCCAACTGCAAAGATTGGTCCCAATGTTTCGATTTCTGCAAACGTTCGAATAGCTGCTGGTGTAAGACTTATAAGTTGCATAATCTTGGATGATGTTGAAATCAAGGAAAATGCAGTTGTTATGCATGCTATTGTGGGTTGGAAGTCTTCTGTTGGAAGATGGTCACGCGCTGAAGGAGACTACAATGCAAAGCTTGGTATTACAATCCTTGGAGAAGCTGTGACTGTTGAAGACGAAGTCGTGGTGATCAACAGTATTGTTCTACCCAACAAAACTCTCAACGAAAGCGTACAAGAAGAGATCATTCTATAATATTATCAAACTTAGAATTGTTACGCACTTGAATTAAGCTGTAGTTGGGTTTTTGTTTTGTGTTGTTTTTTGTTTCATTTTTGGGAAAACTAACCTTAATTAATTTGGATGATGCATCTTTGAGTTGTGTTTTTATATCAGGAAATACATTACTCATTTGTAAACTTAATACCTTTTGAGAAGAATAAAAAATGAAAAATGAAAATCAA

Network for GWHGAAZE024362

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00483.24	NTP_transferase	10	111	1.30E-11
PF00132.25	Hexapep	264	292	6.20E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00966	GMPP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016779	molecular_function	nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	80.245
	SRR3591706	second leaf	51.529
	SRR3591707	mature leaf	37.582
	SRR3591708	Shoot apex	63.401
	SRR3591709	Stem	72.910
	SRR3591710	White floral bud	59.133
	SRR3591711	White flower	70.081
	SRR3591712	Green floral bud	51.944
	SRR3591713	Yellow flower	75.819
SRP173429	SRR8316895	Juvenile bud stage	28.498
	SRR8316896	Juvenile bud stage	42.857
	SRR8316897	Juvenile bud stage	24.966
	SRR8316894	Third green stage	20.596
	SRR8316900	Third green stage	58.778
	SRR8316901	Third green stage	51.405
	SRR8316898	Complete white stage	23.543
	SRR8316899	Complete white stage	52.776
	SRR8316903	Complete white stage	42.965
	SRR8316902	Silver flowering stage	22.904
	SRR8316904	Silver flowering stage	33.714
	SRR8316905	Silver flowering stage	14.280
	SRR8316906	Gold flowering stage	50.934
	SRR8316907	Gold flowering stage	42.878
	SRR8316908	Gold flowering stage	56.290
SRP132670	SRR6706286	Control	44.821
	SRR6706287	Light intensity 50%	46.290
	SRR6706288	Light intensity 20%	49.297
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.095
	CNS0095593	Slightly white alabastrum(diploid) 2	38.007
	CNS0095594	Slightly white alabastrum(diploid) 3	40.206
	CNS0095595	Whole white alabastrum(diploid) 2	38.306
	CNS0095596	Whole white alabastrum(diploid) 3	41.178
	CNS0095597	Whole white alabastrum(diploid) 4	34.868
	CNS0095598	Silvery flower (diploied) 1	41.838
	CNS0095599	Silvery flower (diploied) 2	39.034
	CNS0095600	Silvery flower (diploied) 3	60.986
	CNS0095601	Golden flower (diploid) 1	29.787
	CNS0095602	Golden flower (diploid) 2	49.946
	CNS0095603	Golden flower (diploid) 3	47.758
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.256
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.423
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.246
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.489
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.355
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.762
	CNS0095610	Silvery flower (tetraploid) 1	57.408
	CNS0095611	Silvery flower (tetraploid) 2	56.858
	CNS0095612	Silvery flower (tetraploid) 3	52.528
	CNS0095613	Golden flower (tetraploid) 1	35.602
	CNS0095614	Golden flower (tetraploid) 2	47.929
	CNS0095615	Golden flower (tetraploid) 3	40.487
CRA001975	CRR073297	Stem 1	36.467
	CRR073298	Stem 2	31.250
	CRR073299	Stem 3	25.871
	CRR073300	Leaf 1	39.145
	CRR073301	Leaf 2	31.200
	CRR073302	Leaf 3	34.758
	CRR073303	Juvenile bud 1	34.314
	CRR073304	Juvenile bud 2	30.845
	CRR073305	Juvenile bud 3	31.333
	CRR073306	Third green 1	16.693
	CRR073307	Third green 2	17.540
	CRR073308	Third green 3	16.950
	CRR073309	Second white 1	22.705
	CRR073310	Second white 2	25.557
	CRR073311	Second white 3	16.495
	CRR073312	Silver flowering 1	12.706
	CRR073313	Silver flowering 2	9.279
	CRR073314	Silver flowering 3	12.792
	CRR073315	Gold flowering 1	21.657
	CRR073316	Gold flowering 2	31.687
	CRR073317	Gold flowering 3	14.959
	CRR073318	Tawny withering 1	30.296
	CRR073319	Tawny withering 2	28.425
	CRR073320	Tawny withering 3	32.075