Detail information of GWHGAAZE024380


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008226077.12.06271E-42PREDICTED: F-box/kelch-repeat protein At3g06240-like [Prunus mume]
Swissprottr|Q8GXC7|FBK50_ARATH5E-29F-box/kelch-repeat protein At3g06240
trEMBLtr|M1CWH8|M1CWH8_SOLTU1E-42Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400076284}
TAIR10AT3G06240.14E-24F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4118440441185540+
GWHAAZE00000007mRNA4118440441185540+
GWHAAZE00000007exon4118440441185540+
GWHAAZE00000007CDS4118440441185540+
Transcript Sequence

Network for GWHGAAZE024380

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box9461.30E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.789
SRR3591706second leaf6.045
SRR3591707mature leaf8.472
SRR3591708Shoot apex10.025
SRR3591709Stem10.729
SRR3591710White floral bud9.738
SRR3591711White flower6.675
SRR3591712Green floral bud10.058
SRR3591713Yellow flower7.578
SRP173429 SRR8316895Juvenile bud stage 20.769
SRR8316896Juvenile bud stage 26.017
SRR8316897Juvenile bud stage 8.571
SRR8316894Third green stage 9.787
SRR8316900Third green stage 31.160
SRR8316901Third green stage 30.798
SRR8316898Complete white stage 10.788
SRR8316899Complete white stage 39.888
SRR8316903Complete white stage 18.902
SRR8316902Silver flowering stage13.848
SRR8316904Silver flowering stage18.876
SRR8316905Silver flowering stage8.392
SRR8316906Gold flowering stage 33.380
SRR8316907Gold flowering stage 33.311
SRR8316908Gold flowering stage 26.401
SRP132670SRR6706286Control17.826
SRR6706287Light intensity 50%17.031
SRR6706288Light intensity 20%17.773
CNP0000432CNS0095592Slightly white alabastrum(diploid) 137.743
CNS0095593Slightly white alabastrum(diploid) 245.621
CNS0095594Slightly white alabastrum(diploid) 345.015
CNS0095595Whole white alabastrum(diploid) 236.262
CNS0095596Whole white alabastrum(diploid) 331.485
CNS0095597Whole white alabastrum(diploid) 434.994
CNS0095598Silvery flower (diploied) 130.630
CNS0095599Silvery flower (diploied) 219.992
CNS0095600Silvery flower (diploied) 326.867
CNS0095601Golden flower (diploid) 129.419
CNS0095602Golden flower (diploid) 229.233
CNS0095603Golden flower (diploid) 333.353
CNS0095604Slightly white alabastrum(tetraploid) 121.866
CNS0095605Slightly white alabastrum(tetraploid) 220.830
CNS0095606Slightly white alabastrum(tetraploid) 323.684
CNS0095607Whole white alabastrum(tetraploid) 122.257
CNS0095608Whole white alabastrum(tetraploid) 216.383
CNS0095609Whole white alabastrum(tetraploid) 320.763
CNS0095610Silvery flower (tetraploid) 119.121
CNS0095611Silvery flower (tetraploid) 214.494
CNS0095612Silvery flower (tetraploid) 316.674
CNS0095613Golden flower (tetraploid) 117.117
CNS0095614Golden flower (tetraploid) 217.040
CNS0095615Golden flower (tetraploid) 322.559
CRA001975CRR073297Stem 123.310
CRR073298Stem 224.607
CRR073299Stem 319.206
CRR073300Leaf 125.875
CRR073301Leaf 229.493
CRR073302Leaf 317.954
CRR073303Juvenile bud 121.159
CRR073304Juvenile bud 212.544
CRR073305Juvenile bud 314.093
CRR073306Third green 111.612
CRR073307Third green 212.449
CRR073308Third green 314.500
CRR073309Second white 113.551
CRR073310Second white 216.614
CRR073311Second white 315.578
CRR073312Silver flowering 117.452
CRR073313Silver flowering 214.907
CRR073314Silver flowering 311.790
CRR073315Gold flowering 19.692
CRR073316Gold flowering 214.610
CRR073317Gold flowering 36.477
CRR073318Tawny withering 122.960
CRR073319Tawny withering 240.115
CRR073320Tawny withering 320.207