Detail information of GWHGAAZE024387


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275285.10PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Vitis vinifera]
COGYP_004462436.17E-95SNF2-like protein
Swissprottr|B5BT18|BTAF1_ARATH0TATA-binding protein-associated factor BTAF1
trEMBLtr|F6I5H6|F6I5H6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB62194.1}
TAIR10AT3G54280.10DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4133485041382705-
GWHAAZE00000007mRNA4133485041382705-
GWHAAZE00000007exon4138232041382705-
GWHAAZE00000007exon4136380841364005-
GWHAAZE00000007exon4136354341363597-
GWHAAZE00000007exon4135942741359508-
GWHAAZE00000007exon4135828141358615-
GWHAAZE00000007exon4135611441356213-
GWHAAZE00000007exon4135565941355757-
GWHAAZE00000007exon4135496841355577-
GWHAAZE00000007exon4135376141353893-
GWHAAZE00000007exon4135359341353679-
GWHAAZE00000007exon4135290541353116-
GWHAAZE00000007exon4134896941349209-
GWHAAZE00000007exon4134726041347430-
GWHAAZE00000007exon4134668041347105-
GWHAAZE00000007exon4134613741346580-
GWHAAZE00000007exon4134568141345800-
GWHAAZE00000007exon4134511741345599-
GWHAAZE00000007exon4134282441342880-
GWHAAZE00000007exon4134190941342225-
GWHAAZE00000007exon4134168841341828-
GWHAAZE00000007exon4134091541341404-
GWHAAZE00000007exon4134076641340834-
GWHAAZE00000007exon4134004041340144-
GWHAAZE00000007exon4133973441339958-
GWHAAZE00000007exon4133938441339647-
GWHAAZE00000007exon4133875441338875-
GWHAAZE00000007exon4133748341337592-
GWHAAZE00000007exon4133730641337388-
GWHAAZE00000007exon4133525741335466-
GWHAAZE00000007exon4133485041335020-
GWHAAZE00000007CDS4138232041382705-
GWHAAZE00000007CDS4136380841364005-
GWHAAZE00000007CDS4136354341363597-
GWHAAZE00000007CDS4135942741359508-
GWHAAZE00000007CDS4135828141358615-
GWHAAZE00000007CDS4135611441356213-
GWHAAZE00000007CDS4135565941355757-
GWHAAZE00000007CDS4135496841355577-
GWHAAZE00000007CDS4135376141353893-
GWHAAZE00000007CDS4135359341353679-
GWHAAZE00000007CDS4135290541353116-
GWHAAZE00000007CDS4134896941349209-
GWHAAZE00000007CDS4134726041347430-
GWHAAZE00000007CDS4134668041347105-
GWHAAZE00000007CDS4134613741346580-
GWHAAZE00000007CDS4134568141345800-
GWHAAZE00000007CDS4134511741345599-
GWHAAZE00000007CDS4134282441342880-
GWHAAZE00000007CDS4134190941342225-
GWHAAZE00000007CDS4134168841341828-
GWHAAZE00000007CDS4134091541341404-
GWHAAZE00000007CDS4134076641340834-
GWHAAZE00000007CDS4134004041340144-
GWHAAZE00000007CDS4133973441339958-
GWHAAZE00000007CDS4133938441339647-
GWHAAZE00000007CDS4133875441338875-
GWHAAZE00000007CDS4133748341337592-
GWHAAZE00000007CDS4133730641337388-
GWHAAZE00000007CDS4133525741335466-
GWHAAZE00000007CDS4133485041335020-
Transcript Sequence

Network for GWHGAAZE024387

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13966.7zf-RVT10814.10E-17
PF12054.9DUF353589713551.60E-101
PF00176.24SNF2_N157918765.70E-61
PF00271.32Helicase_C194020645.30E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.009
SRR3591706second leaf11.350
SRR3591707mature leaf11.413
SRR3591708Shoot apex16.475
SRR3591709Stem18.649
SRR3591710White floral bud18.108
SRR3591711White flower20.513
SRR3591712Green floral bud16.221
SRR3591713Yellow flower19.549
SRP173429 SRR8316895Juvenile bud stage 7.944
SRR8316896Juvenile bud stage 12.005
SRR8316897Juvenile bud stage 6.990
SRR8316894Third green stage 5.950
SRR8316900Third green stage 12.686
SRR8316901Third green stage 12.330
SRR8316898Complete white stage 3.196
SRR8316899Complete white stage 9.266
SRR8316903Complete white stage 9.648
SRR8316902Silver flowering stage5.348
SRR8316904Silver flowering stage9.875
SRR8316905Silver flowering stage3.980
SRR8316906Gold flowering stage 13.514
SRR8316907Gold flowering stage 12.476
SRR8316908Gold flowering stage 15.130
SRP132670SRR6706286Control8.987
SRR6706287Light intensity 50%9.809
SRR6706288Light intensity 20%10.207
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.250
CNS0095593Slightly white alabastrum(diploid) 25.878
CNS0095594Slightly white alabastrum(diploid) 36.911
CNS0095595Whole white alabastrum(diploid) 26.289
CNS0095596Whole white alabastrum(diploid) 35.948
CNS0095597Whole white alabastrum(diploid) 46.080
CNS0095598Silvery flower (diploied) 16.636
CNS0095599Silvery flower (diploied) 24.684
CNS0095600Silvery flower (diploied) 311.718
CNS0095601Golden flower (diploid) 15.033
CNS0095602Golden flower (diploid) 211.864
CNS0095603Golden flower (diploid) 310.798
CNS0095604Slightly white alabastrum(tetraploid) 19.693
CNS0095605Slightly white alabastrum(tetraploid) 28.261
CNS0095606Slightly white alabastrum(tetraploid) 313.891
CNS0095607Whole white alabastrum(tetraploid) 16.766
CNS0095608Whole white alabastrum(tetraploid) 25.311
CNS0095609Whole white alabastrum(tetraploid) 311.064
CNS0095610Silvery flower (tetraploid) 113.931
CNS0095611Silvery flower (tetraploid) 212.600
CNS0095612Silvery flower (tetraploid) 311.996
CNS0095613Golden flower (tetraploid) 16.619
CNS0095614Golden flower (tetraploid) 210.328
CNS0095615Golden flower (tetraploid) 316.474
CRA001975CRR073297Stem 112.803
CRR073298Stem 212.129
CRR073299Stem 37.109
CRR073300Leaf 111.878
CRR073301Leaf 210.940
CRR073302Leaf 37.061
CRR073303Juvenile bud 17.146
CRR073304Juvenile bud 24.094
CRR073305Juvenile bud 310.965
CRR073306Third green 13.375
CRR073307Third green 21.839
CRR073308Third green 34.184
CRR073309Second white 13.519
CRR073310Second white 26.017
CRR073311Second white 36.650
CRR073312Silver flowering 16.424
CRR073313Silver flowering 26.962
CRR073314Silver flowering 35.580
CRR073315Gold flowering 11.877
CRR073316Gold flowering 24.567
CRR073317Gold flowering 32.266
CRR073318Tawny withering 17.760
CRR073319Tawny withering 27.825
CRR073320Tawny withering 37.382