Detail information of GWHGAAZE024399


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007131323.10hypothetical protein PHAVU_011G004000g [Phaseolus vulgaris]
Swissprottr|Q9C810|Y1342_ARATH0PHD finger protein At1g33420
trEMBLtr|V7ACS3|V7ACS3_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW03317.1}
TAIR10AT1G33420.13E-163RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4153065241535063-
GWHAAZE00000007mRNA4153065241535063-
GWHAAZE00000007exon4153065241531483-
GWHAAZE00000007exon4153157241531785-
GWHAAZE00000007exon4153195541532178-
GWHAAZE00000007exon4153293641533151-
GWHAAZE00000007exon4153378641533969-
GWHAAZE00000007exon4153471241535063-
GWHAAZE00000007CDS4153471241535063-
GWHAAZE00000007CDS4153378641533969-
GWHAAZE00000007CDS4153293641533151-
GWHAAZE00000007CDS4153195541532178-
GWHAAZE00000007CDS4153157241531785-
GWHAAZE00000007CDS4153065241531483-
Transcript Sequence

Network for GWHGAAZE024399

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD5846303.20E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.569
SRR3591706second leaf2.011
SRR3591707mature leaf0.505
SRR3591708Shoot apex6.944
SRR3591709Stem2.967
SRR3591710White floral bud1.883
SRR3591711White flower1.960
SRR3591712Green floral bud1.745
SRR3591713Yellow flower1.126
SRP173429 SRR8316895Juvenile bud stage 1.230
SRR8316896Juvenile bud stage 2.213
SRR8316897Juvenile bud stage 0.555
SRR8316894Third green stage 0.916
SRR8316900Third green stage 1.374
SRR8316901Third green stage 1.258
SRR8316898Complete white stage 0.052
SRR8316899Complete white stage 0.813
SRR8316903Complete white stage 0.425
SRR8316902Silver flowering stage0.275
SRR8316904Silver flowering stage0.484
SRR8316905Silver flowering stage0.279
SRR8316906Gold flowering stage 0.625
SRR8316907Gold flowering stage 1.066
SRR8316908Gold flowering stage 0.312
SRP132670SRR6706286Control1.051
SRR6706287Light intensity 50%0.962
SRR6706288Light intensity 20%1.315
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.948
CNS0095593Slightly white alabastrum(diploid) 21.510
CNS0095594Slightly white alabastrum(diploid) 31.515
CNS0095595Whole white alabastrum(diploid) 20.515
CNS0095596Whole white alabastrum(diploid) 31.208
CNS0095597Whole white alabastrum(diploid) 40.363
CNS0095598Silvery flower (diploied) 11.318
CNS0095599Silvery flower (diploied) 21.459
CNS0095600Silvery flower (diploied) 31.163
CNS0095601Golden flower (diploid) 12.521
CNS0095602Golden flower (diploid) 21.302
CNS0095603Golden flower (diploid) 30.993
CNS0095604Slightly white alabastrum(tetraploid) 11.542
CNS0095605Slightly white alabastrum(tetraploid) 21.873
CNS0095606Slightly white alabastrum(tetraploid) 33.220
CNS0095607Whole white alabastrum(tetraploid) 11.279
CNS0095608Whole white alabastrum(tetraploid) 20.771
CNS0095609Whole white alabastrum(tetraploid) 30.969
CNS0095610Silvery flower (tetraploid) 10.739
CNS0095611Silvery flower (tetraploid) 21.008
CNS0095612Silvery flower (tetraploid) 31.209
CNS0095613Golden flower (tetraploid) 10.558
CNS0095614Golden flower (tetraploid) 20.957
CNS0095615Golden flower (tetraploid) 30.350
CRA001975CRR073297Stem 14.230
CRR073298Stem 23.349
CRR073299Stem 32.194
CRR073300Leaf 11.815
CRR073301Leaf 21.522
CRR073302Leaf 30.648
CRR073303Juvenile bud 11.048
CRR073304Juvenile bud 20.511
CRR073305Juvenile bud 31.164
CRR073306Third green 10.219
CRR073307Third green 20.148
CRR073308Third green 30.273
CRR073309Second white 10.261
CRR073310Second white 20.101
CRR073311Second white 30.186
CRR073312Silver flowering 10.346
CRR073313Silver flowering 20.510
CRR073314Silver flowering 30.028
CRR073315Gold flowering 10.808
CRR073316Gold flowering 22.166
CRR073317Gold flowering 31.756
CRR073318Tawny withering 11.626
CRR073319Tawny withering 21.858
CRR073320Tawny withering 31.065