Gene detail

Detail information of GWHGAAZE024404

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009772779.1	9.4146E-120	PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|D9J034\|WHY2_SOLTU	2E-113	Single-stranded DNA-bindig protein WHY2, mitochondrial (Precursor)
trEMBL	tr\|K4D8E0\|K4D8E0_SOLLC	2E-109	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc11g044750.1.1}
TAIR10	AT1G71260.1	2E-73	WHIRLY 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	41591886	41599263	+
GWHAAZE00000007	mRNA	41591886	41599263	+
GWHAAZE00000007	exon	41591886	41592031	+
GWHAAZE00000007	exon	41593094	41593209	+
GWHAAZE00000007	exon	41593306	41593403	+
GWHAAZE00000007	exon	41593493	41593585	+
GWHAAZE00000007	exon	41594631	41594725	+
GWHAAZE00000007	exon	41594905	41594978	+
GWHAAZE00000007	exon	41597762	41597850	+
GWHAAZE00000007	exon	41599062	41599263	+
GWHAAZE00000007	five_prime_UTR	41591886	41591945	+
GWHAAZE00000007	CDS	41591946	41592031	+
GWHAAZE00000007	CDS	41593094	41593209	+
GWHAAZE00000007	CDS	41593306	41593403	+
GWHAAZE00000007	CDS	41593493	41593585	+
GWHAAZE00000007	CDS	41594631	41594725	+
GWHAAZE00000007	CDS	41594905	41594978	+
GWHAAZE00000007	CDS	41597762	41597850	+
GWHAAZE00000007	CDS	41599062	41599178	+
GWHAAZE00000007	three_prime_UTR	41599179	41599263	+

Transcript Sequence
>GWHTAAZE024438 AAAACCTTATTAACACATTTTGTTTTCATTTTCGACTCGCTGGCTGGCTGGTTCTTCCGTATGATATCTGGGTGTATTTACGAAGTGAAAGAAAGTATGAAGTTTGGAGCAATGTCGAAGCTTTCAAACCTCTTGCACTCCTCCAGGAACAGGTTATTTCAGAGAAGTTTGTTTGGAGAAGACATTAGAGATTCTCCATGCTTACACAATGTTATGTCCCAGGCGGGCATTTCTACTGCTAGGACTACTTTTGCTGCTGATGGGAAATTAATGGATCAAATATATGCACCATATTCCATTTTCAAGGGCAAAGCCTTACTGTCTGCCTCCCCTGTTCTCCCAACGTTTAGAAAACTAGAGTCTGGAGCCATTAGAGTTGATCGCCGTGGCAATATTATGCTGACATTCTGCCCTGCTATTGGTGAACGCAAGTATGACTGGGAAAAGAAACAGAGATTTGCTTTGTCACCTACTGAGGTTGGATCCTTGATGAGTTTGGGTCCCAAAGATTCTTGTGAATTCTTCCATGACCCTTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCCTTTCAATTAAGCCACATGCTGACGGGACTGGCTATTTTGTTTCTTTGAGTGTTGTCAACAATATCCTAAAAACTAATGAACGCTTTACGGTCCCTGTCACTACAGCTGAGTTTGCTGTGATGCGTACTGCTTTCAGTTTTGCATTACCGCACGTGATGGGGTGGGATCGGTACATGAATCAGCATCCCAAAAGCTTGGAAAAGAATCCATCAAGGGCGGTTCCACAACTCATGAGTACAGAGTGGGATAGATGATGAAGCTGTTTTATATCTGTAAACCTTATCAAAGGTAGACTAGTTGCCTGTGGTGCTTTTTACAATTTCCTTTTAAATTTGTCTC

Network for GWHGAAZE024404

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08536.12	Whirly	80	214	3.10E-57

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Whirly

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0006952	biological_process	defense response
GO:0003677	molecular_function	DNA binding
GO:0003697	molecular_function	single-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.480
	SRR3591706	second leaf	29.451
	SRR3591707	mature leaf	26.936
	SRR3591708	Shoot apex	89.333
	SRR3591709	Stem	30.674
	SRR3591710	White floral bud	22.336
	SRR3591711	White flower	32.186
	SRR3591712	Green floral bud	41.572
	SRR3591713	Yellow flower	28.641
SRP173429	SRR8316895	Juvenile bud stage	32.065
	SRR8316896	Juvenile bud stage	43.883
	SRR8316897	Juvenile bud stage	24.975
	SRR8316894	Third green stage	14.465
	SRR8316900	Third green stage	51.935
	SRR8316901	Third green stage	43.196
	SRR8316898	Complete white stage	10.910
	SRR8316899	Complete white stage	45.697
	SRR8316903	Complete white stage	13.304
	SRR8316902	Silver flowering stage	5.928
	SRR8316904	Silver flowering stage	8.194
	SRR8316905	Silver flowering stage	2.820
	SRR8316906	Gold flowering stage	17.727
	SRR8316907	Gold flowering stage	15.767
	SRR8316908	Gold flowering stage	25.455
SRP132670	SRR6706286	Control	19.085
	SRR6706287	Light intensity 50%	21.093
	SRR6706288	Light intensity 20%	26.267
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.762
	CNS0095593	Slightly white alabastrum(diploid) 2	40.102
	CNS0095594	Slightly white alabastrum(diploid) 3	35.804
	CNS0095595	Whole white alabastrum(diploid) 2	30.809
	CNS0095596	Whole white alabastrum(diploid) 3	33.017
	CNS0095597	Whole white alabastrum(diploid) 4	24.427
	CNS0095598	Silvery flower (diploied) 1	30.011
	CNS0095599	Silvery flower (diploied) 2	25.605
	CNS0095600	Silvery flower (diploied) 3	25.005
	CNS0095601	Golden flower (diploid) 1	26.181
	CNS0095602	Golden flower (diploid) 2	22.819
	CNS0095603	Golden flower (diploid) 3	23.796
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.527
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.154
	CNS0095606	Slightly white alabastrum(tetraploid) 3	78.939
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.022
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.462
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.284
	CNS0095610	Silvery flower (tetraploid) 1	42.469
	CNS0095611	Silvery flower (tetraploid) 2	46.824
	CNS0095612	Silvery flower (tetraploid) 3	32.897
	CNS0095613	Golden flower (tetraploid) 1	27.710
	CNS0095614	Golden flower (tetraploid) 2	35.159
	CNS0095615	Golden flower (tetraploid) 3	14.104
CRA001975	CRR073297	Stem 1	36.412
	CRR073298	Stem 2	29.354
	CRR073299	Stem 3	36.626
	CRR073300	Leaf 1	27.178
	CRR073301	Leaf 2	28.924
	CRR073302	Leaf 3	42.179
	CRR073303	Juvenile bud 1	33.755
	CRR073304	Juvenile bud 2	22.325
	CRR073305	Juvenile bud 3	30.551
	CRR073306	Third green 1	3.489
	CRR073307	Third green 2	2.565
	CRR073308	Third green 3	3.199
	CRR073309	Second white 1	11.732
	CRR073310	Second white 2	5.053
	CRR073311	Second white 3	7.596
	CRR073312	Silver flowering 1	5.134
	CRR073313	Silver flowering 2	8.268
	CRR073314	Silver flowering 3	9.399
	CRR073315	Gold flowering 1	25.120
	CRR073316	Gold flowering 2	29.484
	CRR073317	Gold flowering 3	27.901
	CRR073318	Tawny withering 1	27.607
	CRR073319	Tawny withering 2	26.354
	CRR073320	Tawny withering 3	29.105