Detail information of GWHGAAZE024417


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004136687.10PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Cucumis sativus]
COGYP_003167824.13E-31WD-40 repeat-containing protein
Swissprottr|Q38884|EIF3I_ARATH0Eukaryotic translation initiation factor 3 subunit I {ECO:0000255|HAMAP-Rule:MF_03008}
trEMBLtr|A0A0A0LG05|A0A0A0LG05_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN59537.1}
TAIR10AT2G46290.12E-155Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4181833541823457-
GWHAAZE00000007mRNA4181833541823457-
GWHAAZE00000007exon4181833541818410-
GWHAAZE00000007exon4181927941819396-
GWHAAZE00000007exon4182051641820541-
GWHAAZE00000007exon4182067241820751-
GWHAAZE00000007exon4182085241820938-
GWHAAZE00000007exon4182147441821563-
GWHAAZE00000007exon4182165541821774-
GWHAAZE00000007exon4182200541822132-
GWHAAZE00000007exon4182267141822886-
GWHAAZE00000007exon4182327441823457-
GWHAAZE00000007CDS4182327441823457-
GWHAAZE00000007CDS4182267141822886-
GWHAAZE00000007CDS4182200541822132-
GWHAAZE00000007CDS4182165541821774-
GWHAAZE00000007CDS4182147441821563-
GWHAAZE00000007CDS4182085241820938-
GWHAAZE00000007CDS4182067241820751-
GWHAAZE00000007CDS4182051641820541-
GWHAAZE00000007CDS4181927941819396-
GWHAAZE00000007CDS4181833541818410-
Transcript Sequence

Network for GWHGAAZE024417

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD407370.28
PF00400.33WD4043809.00E-08
PF00400.33WD401882190.00017
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K03246EIF3I RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005737cellular_componentcytoplasm
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0005515molecular_functionprotein binding
GO:0003743molecular_functiontranslation initiation factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf132.165
SRR3591706second leaf74.328
SRR3591707mature leaf62.175
SRR3591708Shoot apex152.760
SRR3591709Stem85.664
SRR3591710White floral bud93.157
SRR3591711White flower130.896
SRR3591712Green floral bud126.638
SRR3591713Yellow flower94.070
SRP173429 SRR8316895Juvenile bud stage 90.982
SRR8316896Juvenile bud stage 129.913
SRR8316897Juvenile bud stage 72.679
SRR8316894Third green stage 48.185
SRR8316900Third green stage 155.024
SRR8316901Third green stage 138.405
SRR8316898Complete white stage 52.899
SRR8316899Complete white stage 137.638
SRR8316903Complete white stage 72.345
SRR8316902Silver flowering stage51.730
SRR8316904Silver flowering stage59.321
SRR8316905Silver flowering stage25.833
SRR8316906Gold flowering stage 83.356
SRR8316907Gold flowering stage 99.994
SRR8316908Gold flowering stage 99.943
SRP132670SRR6706286Control150.794
SRR6706287Light intensity 50%147.658
SRR6706288Light intensity 20%166.625
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1126.082
CNS0095593Slightly white alabastrum(diploid) 2131.752
CNS0095594Slightly white alabastrum(diploid) 3104.402
CNS0095595Whole white alabastrum(diploid) 2105.882
CNS0095596Whole white alabastrum(diploid) 3122.525
CNS0095597Whole white alabastrum(diploid) 485.878
CNS0095598Silvery flower (diploied) 1103.513
CNS0095599Silvery flower (diploied) 2101.110
CNS0095600Silvery flower (diploied) 399.677
CNS0095601Golden flower (diploid) 176.634
CNS0095602Golden flower (diploid) 295.952
CNS0095603Golden flower (diploid) 392.226
CNS0095604Slightly white alabastrum(tetraploid) 1125.924
CNS0095605Slightly white alabastrum(tetraploid) 2118.210
CNS0095606Slightly white alabastrum(tetraploid) 3164.532
CNS0095607Whole white alabastrum(tetraploid) 166.908
CNS0095608Whole white alabastrum(tetraploid) 255.758
CNS0095609Whole white alabastrum(tetraploid) 3129.297
CNS0095610Silvery flower (tetraploid) 1103.729
CNS0095611Silvery flower (tetraploid) 295.751
CNS0095612Silvery flower (tetraploid) 383.693
CNS0095613Golden flower (tetraploid) 164.845
CNS0095614Golden flower (tetraploid) 299.363
CNS0095615Golden flower (tetraploid) 360.579
CRA001975CRR073297Stem 1191.971
CRR073298Stem 2173.886
CRR073299Stem 3215.372
CRR073300Leaf 1180.384
CRR073301Leaf 2199.971
CRR073302Leaf 3253.342
CRR073303Juvenile bud 1228.640
CRR073304Juvenile bud 2157.488
CRR073305Juvenile bud 3210.148
CRR073306Third green 189.708
CRR073307Third green 276.001
CRR073308Third green 384.903
CRR073309Second white 183.450
CRR073310Second white 275.710
CRR073311Second white 368.487
CRR073312Silver flowering 172.967
CRR073313Silver flowering 287.922
CRR073314Silver flowering 372.449
CRR073315Gold flowering 191.513
CRR073316Gold flowering 2100.379
CRR073317Gold flowering 379.133
CRR073318Tawny withering 1160.640
CRR073319Tawny withering 2128.237
CRR073320Tawny withering 3178.128