Gene detail

Detail information of GWHGAAZE024429

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009623658.1	4.7399E-167	PREDICTED: uncharacterized protein LOC104114825 [Nicotiana tomentosiformis]
COG	NP_869843.1	7E-42	hypothetical protein RB11207
trEMBL	tr\|V4TNA1\|V4TNA1_9ROSI	1E-162	Uncharacterized protein {ECO:0000313\|EMBL:ESR54902.1}
TAIR10	AT1G22850.1	7E-67	SNARE associated Golgi protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	42040117	42045089	+
GWHAAZE00000007	mRNA	42040117	42045089	+
GWHAAZE00000007	exon	42040117	42040594	+
GWHAAZE00000007	exon	42040668	42040730	+
GWHAAZE00000007	exon	42041222	42041281	+
GWHAAZE00000007	exon	42041466	42041518	+
GWHAAZE00000007	exon	42041774	42041866	+
GWHAAZE00000007	exon	42041950	42042173	+
GWHAAZE00000007	exon	42043640	42043706	+
GWHAAZE00000007	exon	42044445	42044555	+
GWHAAZE00000007	exon	42045066	42045089	+
GWHAAZE00000007	CDS	42040117	42040594	+
GWHAAZE00000007	CDS	42040668	42040730	+
GWHAAZE00000007	CDS	42041222	42041281	+
GWHAAZE00000007	CDS	42041466	42041518	+
GWHAAZE00000007	CDS	42041774	42041866	+
GWHAAZE00000007	CDS	42041950	42042173	+
GWHAAZE00000007	CDS	42043640	42043706	+
GWHAAZE00000007	CDS	42044445	42044555	+
GWHAAZE00000007	CDS	42045066	42045089	+

Transcript Sequence
>GWHTAAZE024463 ATGCGCCTTCCCCAGAGGCCACCTCCACCCCGATGCCTCTCCTCTTCCCCCCCTCTGAAACCCCACTTCCACTTCTCTCTTTCCCCATCTTCTTCCTCTTTCCTCTTCTCCTTCAAGCCCAAAAGATTTCACTTCTTGAAACCCTGTTCTTCTCTCAAACAAACAAAGAAACAGAAAAATGCCCTTCAAAAGACTCCCAATAATGCCCCCCAGAGCTTGAGGAGGTTATTGAATTTGAATCCAAAAGATGACGATGATGATGAAGACGAAAGTAAAGATAGTGGAGGTTTTGATGGGGATTCTGCTTTAAAGGGTACCGTTTTCGCTGGTTTGTTGCTTTTGGGTTTTGTTGGAGGGTTTGGTACTGTTGGGTATATCTACAAGGACCAGATCAATGGCTTCTTGACCCAGTTTTCTGGGTTTATTGAAGGTAAAATTTTCTTGAAAAGGAATGCCTATCTACTCTTTGTGTATTTTTTTAGAAATTTGGGAGGGTTTAACTTGTTAGCTACTAGAAATTGGGTTACTTCTAACTTCACAGAAACGGTGTTAAAGGGATACTGGTGTACTACAAAGCAACTTAAAGGAGAAAAGACTTTAGGTTATGGCCCAGCAGGATATGCTCTTTTTGTAGCAGTTTATGCCGGATTAGAAGTACTTGCAATACCAGCAATTCCACTGACAATGTCAGCTGGTCTCCTTTTTGGTTCTCTCACTGGAACCATCCTTGTTTCTATCAGTGGAACGGTGGCAGCAAGTGTGGCTTTTCTTATTGCTAGATATTTTGCTCGTGACCGCATTCTTAAACTGGTTGAAGGAAATAAAAAGTTTCTTGCAATTGACAAAGCAATTGGGGAAAATGGTTTCAGAGTTGTTACGCTTCTCCGTTTGAGTCCTTTGCTTCCATTTTCTCTAGGGAATTATTTATACGGACTTACATCGGTGAAGTTTGTTCCATACGTTTTGGGAAGTTGGTTGGGGATGCTTCCCGGAACATGGGCTTATGTGAGTGCCGGTGCATTTGGGCGAGCAATTATTCAAGAAGAATCCGAGGTTGGTTTACCTGGGGGAAATGGTCAGCTATTGACGCTTGGTTTAGGACTATTAGCTACAGCATTGGCTGCAGCTTATGTAACGAAAGTAGCTAAGGATGCTGTGAAAGATATTGAGTAG

Network for GWHGAAZE024429

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09335.12	SNARE_assoc	222	340	6.40E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.835
	SRR3591706	second leaf	121.463
	SRR3591707	mature leaf	179.809
	SRR3591708	Shoot apex	75.355
	SRR3591709	Stem	48.796
	SRR3591710	White floral bud	26.717
	SRR3591711	White flower	32.137
	SRR3591712	Green floral bud	36.937
	SRR3591713	Yellow flower	20.959
SRP173429	SRR8316895	Juvenile bud stage	40.104
	SRR8316896	Juvenile bud stage	50.619
	SRR8316897	Juvenile bud stage	27.733
	SRR8316894	Third green stage	22.638
	SRR8316900	Third green stage	76.640
	SRR8316901	Third green stage	81.006
	SRR8316898	Complete white stage	28.894
	SRR8316899	Complete white stage	79.900
	SRR8316903	Complete white stage	51.210
	SRR8316902	Silver flowering stage	25.787
	SRR8316904	Silver flowering stage	33.953
	SRR8316905	Silver flowering stage	19.323
	SRR8316906	Gold flowering stage	45.955
	SRR8316907	Gold flowering stage	41.000
	SRR8316908	Gold flowering stage	52.594
SRP132670	SRR6706286	Control	72.722
	SRR6706287	Light intensity 50%	61.326
	SRR6706288	Light intensity 20%	61.413
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.288
	CNS0095593	Slightly white alabastrum(diploid) 2	39.996
	CNS0095594	Slightly white alabastrum(diploid) 3	35.534
	CNS0095595	Whole white alabastrum(diploid) 2	38.026
	CNS0095596	Whole white alabastrum(diploid) 3	39.877
	CNS0095597	Whole white alabastrum(diploid) 4	32.782
	CNS0095598	Silvery flower (diploied) 1	58.315
	CNS0095599	Silvery flower (diploied) 2	62.159
	CNS0095600	Silvery flower (diploied) 3	79.567
	CNS0095601	Golden flower (diploid) 1	58.459
	CNS0095602	Golden flower (diploid) 2	77.814
	CNS0095603	Golden flower (diploid) 3	78.690
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.213
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.653
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.335
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.794
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.109
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.424
	CNS0095610	Silvery flower (tetraploid) 1	71.055
	CNS0095611	Silvery flower (tetraploid) 2	85.726
	CNS0095612	Silvery flower (tetraploid) 3	48.005
	CNS0095613	Golden flower (tetraploid) 1	37.479
	CNS0095614	Golden flower (tetraploid) 2	56.080
	CNS0095615	Golden flower (tetraploid) 3	15.697
CRA001975	CRR073297	Stem 1	32.271
	CRR073298	Stem 2	32.203
	CRR073299	Stem 3	32.835
	CRR073300	Leaf 1	35.020
	CRR073301	Leaf 2	34.996
	CRR073302	Leaf 3	24.117
	CRR073303	Juvenile bud 1	37.621
	CRR073304	Juvenile bud 2	33.300
	CRR073305	Juvenile bud 3	38.384
	CRR073306	Third green 1	15.322
	CRR073307	Third green 2	11.431
	CRR073308	Third green 3	17.040
	CRR073309	Second white 1	21.686
	CRR073310	Second white 2	22.267
	CRR073311	Second white 3	12.841
	CRR073312	Silver flowering 1	7.755
	CRR073313	Silver flowering 2	7.200
	CRR073314	Silver flowering 3	8.610
	CRR073315	Gold flowering 1	143.508
	CRR073316	Gold flowering 2	192.375
	CRR073317	Gold flowering 3	114.057
	CRR073318	Tawny withering 1	23.715
	CRR073319	Tawny withering 2	22.033
	CRR073320	Tawny withering 3	18.510