Gene detail

Detail information of GWHGAAZE024450

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010653057.1	0	PREDICTED: long chain base biosynthesis protein 1 [Vitis vinifera]
COG	YP_004340686.1	6E-53	glycine C-acetyltransferase
Swissprot	tr\|Q94IB8\|LCB1_ARATH	0	Long chain base biosynthesis protein 1
trEMBL	tr\|D7TB41\|D7TB41_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27714.3}
TAIR10	AT4G36480.2	0	long-chain base1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	42646529	42666128	+
GWHAAZE00000007	mRNA	42646529	42666128	+
GWHAAZE00000007	exon	42646529	42646651	+
GWHAAZE00000007	exon	42646779	42646939	+
GWHAAZE00000007	exon	42647671	42647897	+
GWHAAZE00000007	exon	42647997	42648091	+
GWHAAZE00000007	exon	42650964	42651055	+
GWHAAZE00000007	exon	42651951	42652044	+
GWHAAZE00000007	exon	42652136	42652208	+
GWHAAZE00000007	exon	42652526	42652658	+
GWHAAZE00000007	exon	42653548	42653722	+
GWHAAZE00000007	exon	42662538	42662678	+
GWHAAZE00000007	exon	42662761	42662856	+
GWHAAZE00000007	exon	42663926	42664124	+
GWHAAZE00000007	exon	42664901	42665028	+
GWHAAZE00000007	exon	42665952	42666128	+
GWHAAZE00000007	five_prime_UTR	42646529	42646651	+
GWHAAZE00000007	five_prime_UTR	42646779	42646939	+
GWHAAZE00000007	five_prime_UTR	42647671	42647746	+
GWHAAZE00000007	CDS	42647747	42647897	+
GWHAAZE00000007	CDS	42647997	42648091	+
GWHAAZE00000007	CDS	42650964	42651055	+
GWHAAZE00000007	CDS	42651951	42652044	+
GWHAAZE00000007	CDS	42652136	42652208	+
GWHAAZE00000007	CDS	42652526	42652658	+
GWHAAZE00000007	CDS	42653548	42653722	+
GWHAAZE00000007	CDS	42662538	42662678	+
GWHAAZE00000007	CDS	42662761	42662856	+
GWHAAZE00000007	CDS	42663926	42664124	+
GWHAAZE00000007	CDS	42664901	42665028	+
GWHAAZE00000007	CDS	42665952	42666128	+

Transcript Sequence
>GWHTAAZE024484 CGTCCGGCTACGGTGTCCGTATCCTTAGAATTTCCTCTCCTCTTCCATCATGGACGACTCCTCCTTCCTCCGTCTTCTCAAACCGGCTCCTCCCTCATTCATAAACTAAACTACTCTCCTCAGGTCAATTCTCTTCTTACAGATTTAACAGCTACGAACTGAATTCAGGAGGCTCCAAAACTTGTACCATTAACAGCCTCGATTCATTAGTAACTACATATACAATAGGAAATTTTTGAATCTGTAATCCGACCTCGCCGTTGATCTCTTTAATTAGGTGTCAGGTAAGATCGGTTTCCACTCTTTAAAGTTTGCTAGTATAGTAGAAAGAGGATTGTGTACCTTTCTTTGTGGATTATAATGACTGAAGCCTTGAATAATAGCCAAATGGAGATGTTGAATACAATGGCATCGGCTGTAATGGATATCGTGAAAACTGCTTCTGATTGGGTAACATTTGCATTTGACGCTCCTTTTGCCCGAGCTGATGTTTTTGGGGTGCGCATTGGAGGACATCTATTTGTGGAGGGTCTTCTCCTAGTAGTTATCCTTGTCCTTCTTTCCCAGAAAAGTTACAAGCCACCTAAACGGCCACTAACAAAGAAGGAAATTGATGAACTGTGTGACGAATGGGTTCCGGATTCTCTTATTCCTCCTATTACAGAAGAGATGCGAAGCGAACCTCCAGTAATGGAAAGTGCTGCAGGGCCACATACAGTAATCAATGGTGCAGAAGTTGTGAACTTTGCATCTGCAAATTACCTTGGATTAATTGGACATGAGAAGTTACTTGAGTCATGCACTTCTGCACTGGAGAAATATGGCGTTGGTTCTTGTGGACCTCGTGGATTTTACGGAACCATAGATGTCCATCTCGATTGTGAAGCCAGAATAGCAAAGTTTTTGGGAACTCCCGATTCCATACTCTATTCCTATGGACTTTCCACCATGTTCAGTGCAATTCCAGCTTTTTGTAAGAAAGGCGACATTGTCATTGTGGACGAGGGCGTCCACTGGGGAATACAAAACGGTCTTTATCTGTCCAGAAGTACAATTGTATACTTCAAGCACAATGATATGGAGTCCTTGCAAAGTACTCTGGAGAAAGTTACTCTAGATAATAAGCGAGCTAAGAAGCTAAGGCGTTACATTGTGGTTGAAGCTGTGTACCAGAATTCAGGCCAAATTGCTCCATTGGATGAGATCATCAGATTAAAGGAGAAATACCGCTTCCGTGTTTTATTAGATGAGAGTAACTCATTTGGCGTTCTTGGCAGTTCCGGTAGAGGTCTAACTGAACACAGCGGAGTAGCGATCGAGAAAATCGATATTGTAACTGCTGCAATGGGACACGCGTTGGCCTCAGAGGGCGGATTTTGCACTGGAAGTGCCCGAGTCATTGATCATCAGTATATTTGCATTACTATTGATCTTTTTTACTTGTCTCACGGTGCTGTATATTTTGGCAGCCTCAGTAGTTCTGGTTATGTATTCTCTGCTTCTTTGCCCCCTTACCTGGCTAGTGCTGCAATTACTGCTATTGATGTCCTCGAAGACAACCCTCAATTGATTACAGATCTGAAGAAAAATATCAGCATACTTTGCAAAGGGTTGTCTGATATAAAAGGCCTTGAGATAGCGAGTGATCCACAATCGCCCATTGTTTTTCTCAGACTAAAGAAACCCACGGGTTCCTTGAAGAGTGACCTATGGTTGCTCGAAGCTATTGCCGATCGTGTATTGAAGGAAGATTCTGTTTTCGTAGTGACCTCAAAACGATCAACACTTGATAAATGCAGTCTGCCTGTGGGAATCAGATTATTGGTCTCGTCTGCCCATTCGGAATCGGACCTAGTTAAAGCATACAAATCATTGAAGAGGGTTGCACCGTTGGTGTTGAAGGGTCAAGATTGA

Network for GWHGAAZE024450

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	125	504	1.20E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00654	SPT	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Sphingolipid signaling pathway	map04071
		Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.901
	SRR3591706	second leaf	21.114
	SRR3591707	mature leaf	22.324
	SRR3591708	Shoot apex	24.298
	SRR3591709	Stem	32.008
	SRR3591710	White floral bud	40.527
	SRR3591711	White flower	44.368
	SRR3591712	Green floral bud	38.772
	SRR3591713	Yellow flower	45.404
SRP173429	SRR8316895	Juvenile bud stage	26.138
	SRR8316896	Juvenile bud stage	37.826
	SRR8316897	Juvenile bud stage	18.813
	SRR8316894	Third green stage	16.147
	SRR8316900	Third green stage	44.067
	SRR8316901	Third green stage	41.036
	SRR8316898	Complete white stage	23.143
	SRR8316899	Complete white stage	50.415
	SRR8316903	Complete white stage	39.018
	SRR8316902	Silver flowering stage	22.543
	SRR8316904	Silver flowering stage	36.532
	SRR8316905	Silver flowering stage	16.561
	SRR8316906	Gold flowering stage	48.226
	SRR8316907	Gold flowering stage	47.866
	SRR8316908	Gold flowering stage	55.074
SRP132670	SRR6706286	Control	35.359
	SRR6706287	Light intensity 50%	34.957
	SRR6706288	Light intensity 20%	37.996
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.780
	CNS0095593	Slightly white alabastrum(diploid) 2	23.609
	CNS0095594	Slightly white alabastrum(diploid) 3	27.765
	CNS0095595	Whole white alabastrum(diploid) 2	27.146
	CNS0095596	Whole white alabastrum(diploid) 3	30.475
	CNS0095597	Whole white alabastrum(diploid) 4	26.130
	CNS0095598	Silvery flower (diploied) 1	19.816
	CNS0095599	Silvery flower (diploied) 2	20.015
	CNS0095600	Silvery flower (diploied) 3	54.279
	CNS0095601	Golden flower (diploid) 1	17.969
	CNS0095602	Golden flower (diploid) 2	51.199
	CNS0095603	Golden flower (diploid) 3	49.464
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.706
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.851
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.443
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.970
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.004
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.559
	CNS0095610	Silvery flower (tetraploid) 1	47.078
	CNS0095611	Silvery flower (tetraploid) 2	42.191
	CNS0095612	Silvery flower (tetraploid) 3	59.185
	CNS0095613	Golden flower (tetraploid) 1	25.827
	CNS0095614	Golden flower (tetraploid) 2	45.383
	CNS0095615	Golden flower (tetraploid) 3	67.822
CRA001975	CRR073297	Stem 1	36.657
	CRR073298	Stem 2	32.521
	CRR073299	Stem 3	32.484
	CRR073300	Leaf 1	44.871
	CRR073301	Leaf 2	38.900
	CRR073302	Leaf 3	38.563
	CRR073303	Juvenile bud 1	41.588
	CRR073304	Juvenile bud 2	38.356
	CRR073305	Juvenile bud 3	40.972
	CRR073306	Third green 1	40.707
	CRR073307	Third green 2	33.366
	CRR073308	Third green 3	40.394
	CRR073309	Second white 1	43.775
	CRR073310	Second white 2	43.629
	CRR073311	Second white 3	45.384
	CRR073312	Silver flowering 1	49.084
	CRR073313	Silver flowering 2	49.667
	CRR073314	Silver flowering 3	47.386
	CRR073315	Gold flowering 1	16.195
	CRR073316	Gold flowering 2	23.959
	CRR073317	Gold flowering 3	17.546
	CRR073318	Tawny withering 1	45.481
	CRR073319	Tawny withering 2	44.027
	CRR073320	Tawny withering 3	49.312