Gene detail

Detail information of GWHGAAZE024453

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10438.1	9.8621E-127	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068US29\|A0A068US29_COFCA	4E-127	Coffea canephora DH200=94 genomic scaffold, scaffold_45 {ECO:0000313\|EMBL:CDP10438.1}
TAIR10	AT2G42160.1	1E-80	zinc finger (ubiquitin-hydrolase) domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	42684365	42687481	+
GWHAAZE00000007	mRNA	42684365	42687481	+
GWHAAZE00000007	exon	42684365	42684641	+
GWHAAZE00000007	exon	42684887	42685011	+
GWHAAZE00000007	exon	42685092	42685206	+
GWHAAZE00000007	exon	42686842	42686906	+
GWHAAZE00000007	exon	42686974	42687080	+
GWHAAZE00000007	exon	42687223	42687481	+
GWHAAZE00000007	CDS	42684365	42684641	+
GWHAAZE00000007	CDS	42684887	42685011	+
GWHAAZE00000007	CDS	42685092	42685206	+
GWHAAZE00000007	CDS	42686842	42686906	+
GWHAAZE00000007	CDS	42686974	42687080	+
GWHAAZE00000007	CDS	42687223	42687481	+

Transcript Sequence
>GWHTAAZE024487 ATGTTCAGTCTGCAAATCCATACAGTCGACACTCCAAAACCTTTCTACGCAACCACCACCACCACGTCCACCACGCACGGCTTAAACCCTACTTTCAACACGGTCGAGCTCAAGTGTATTGTACACCTCTTCCGCAACCTACCTTCCTCATCCTCCTCATCTTCCAGTACTACCATCACCAATGCCACCTCCCTCTCCAACCCCTCCGCTCGGACCACCCTCCTCTTTGTCGTCGCCGTCCCTAACTACCTCTCCCCTGACGAATTCCTCCTGTTCTTTTTGTGCAAATTCAGGAATGATGGCATGGAGGATCGGTATAGTGTGTTAATCAGACTGGTTAATCAGTTGACTGCTGATGGATTCTATTGCAATTTCAATGGAAAGCGATTCAAGCCCTCTGAGGCTGAGGTTTGCCATATGTATTTTACTCAATCAGTAGAGTATGCGGATTTAGCAGAGATTGCCTGTGCACCACCACCCAGTTTTATTGAATTGCCGACTTGTCCTGTTTGTCTAGTTGCTGTATGTGAAAATGGTTATGTCCAAGATGCATGTGATCTTTTTAATGCTTCGAAAACACGGGTCTGTCGACTTTGTCAGGAGCAGGATGATAAACCTACCTGTGCAGTGTGTGGAACATTAAAGAACCCCTGGGTTTGTCTCATATGTGGTTTTGTAGGATGTGGAAGGTACGAGGAAGGGCATGCTATAAGGCATTGGAATGATTCACAGCATTGCTATTCTCTTGAATTAGAAACACAACAGATTTGGGATTATGTAGGCGATAAATATGTTCACCGGTTAAATCAATCAAAAATTGATGCAAAGTCGGTCTCAACAAATTTTCGGTGCAGTACTTGTGGGTATAATGAGGATTCTGGGATTAGCAGTGCACTTGTCAGCAGCAAAGGTGAAGCGGTACTTTTTCTTCATCTTCTTATATACTGA

Network for GWHGAAZE024453

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07576.13	BRAP2	67	154	1.80E-22
PF02148.20	zf-UBP	208	267	1.10E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10632	BRAP	Ras signaling pathway	map04014

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.732
	SRR3591706	second leaf	12.891
	SRR3591707	mature leaf	16.686
	SRR3591708	Shoot apex	15.246
	SRR3591709	Stem	28.044
	SRR3591710	White floral bud	25.411
	SRR3591711	White flower	27.125
	SRR3591712	Green floral bud	20.177
	SRR3591713	Yellow flower	28.654
SRP173429	SRR8316895	Juvenile bud stage	11.282
	SRR8316896	Juvenile bud stage	17.336
	SRR8316897	Juvenile bud stage	9.582
	SRR8316894	Third green stage	9.949
	SRR8316900	Third green stage	17.527
	SRR8316901	Third green stage	17.664
	SRR8316898	Complete white stage	9.326
	SRR8316899	Complete white stage	32.047
	SRR8316903	Complete white stage	25.347
	SRR8316902	Silver flowering stage	11.416
	SRR8316904	Silver flowering stage	19.580
	SRR8316905	Silver flowering stage	8.443
	SRR8316906	Gold flowering stage	22.777
	SRR8316907	Gold flowering stage	19.878
	SRR8316908	Gold flowering stage	22.827
SRP132670	SRR6706286	Control	20.586
	SRR6706287	Light intensity 50%	22.842
	SRR6706288	Light intensity 20%	20.844
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.993
	CNS0095593	Slightly white alabastrum(diploid) 2	9.793
	CNS0095594	Slightly white alabastrum(diploid) 3	9.559
	CNS0095595	Whole white alabastrum(diploid) 2	10.840
	CNS0095596	Whole white alabastrum(diploid) 3	5.200
	CNS0095597	Whole white alabastrum(diploid) 4	10.195
	CNS0095598	Silvery flower (diploied) 1	20.816
	CNS0095599	Silvery flower (diploied) 2	14.325
	CNS0095600	Silvery flower (diploied) 3	24.867
	CNS0095601	Golden flower (diploid) 1	19.748
	CNS0095602	Golden flower (diploid) 2	23.533
	CNS0095603	Golden flower (diploid) 3	25.821
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.454
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.382
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.099
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.957
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.603
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.621
	CNS0095610	Silvery flower (tetraploid) 1	25.680
	CNS0095611	Silvery flower (tetraploid) 2	32.741
	CNS0095612	Silvery flower (tetraploid) 3	21.353
	CNS0095613	Golden flower (tetraploid) 1	15.910
	CNS0095614	Golden flower (tetraploid) 2	23.844
	CNS0095615	Golden flower (tetraploid) 3	22.538
CRA001975	CRR073297	Stem 1	27.118
	CRR073298	Stem 2	26.490
	CRR073299	Stem 3	14.350
	CRR073300	Leaf 1	29.937
	CRR073301	Leaf 2	27.281
	CRR073302	Leaf 3	11.481
	CRR073303	Juvenile bud 1	15.418
	CRR073304	Juvenile bud 2	10.892
	CRR073305	Juvenile bud 3	19.069
	CRR073306	Third green 1	4.214
	CRR073307	Third green 2	2.741
	CRR073308	Third green 3	4.601
	CRR073309	Second white 1	4.574
	CRR073310	Second white 2	7.453
	CRR073311	Second white 3	8.726
	CRR073312	Silver flowering 1	5.322
	CRR073313	Silver flowering 2	6.595
	CRR073314	Silver flowering 3	4.455
	CRR073315	Gold flowering 1	15.096
	CRR073316	Gold flowering 2	32.576
	CRR073317	Gold flowering 3	11.754
	CRR073318	Tawny withering 1	20.865
	CRR073319	Tawny withering 2	22.666
	CRR073320	Tawny withering 3	18.512