Detail information of GWHGAAZE024454


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP10439.10unnamed protein product [Coffea canephora]
COGYP_007055935.12E-20WD40 repeat-containing protein
Swissprottr|Q27GK7|TPR4_ARATH0Topless-related protein 4
trEMBLtr|A0A068UQ95|A0A068UQ95_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_45 {ECO:0000313|EMBL:CDP10439.1}
TAIR10AT3G15880.10WUS-interacting protein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4269292142703848-
GWHAAZE00000007mRNA4269292142703848-
GWHAAZE00000007exon4269292142693119-
GWHAAZE00000007exon4269340642693572-
GWHAAZE00000007exon4269374742693935-
GWHAAZE00000007exon4269506142695156-
GWHAAZE00000007exon4269524542695373-
GWHAAZE00000007exon4269603342696212-
GWHAAZE00000007exon4269631142696421-
GWHAAZE00000007exon4269661242696758-
GWHAAZE00000007exon4269692242697014-
GWHAAZE00000007exon4269713142697295-
GWHAAZE00000007exon4269738442697618-
GWHAAZE00000007exon4269772242697849-
GWHAAZE00000007exon4269988742699982-
GWHAAZE00000007exon4270012142700216-
GWHAAZE00000007exon4270035542700428-
GWHAAZE00000007exon4270058342700652-
GWHAAZE00000007exon4270081942700928-
GWHAAZE00000007exon4270109442701262-
GWHAAZE00000007exon4270208242702194-
GWHAAZE00000007exon4270239042702513-
GWHAAZE00000007exon4270259142702774-
GWHAAZE00000007exon4270286742703025-
GWHAAZE00000007exon4270314142703254-
GWHAAZE00000007exon4270339042703569-
GWHAAZE00000007exon4270376942703848-
GWHAAZE00000007CDS4270376942703848-
GWHAAZE00000007CDS4270339042703569-
GWHAAZE00000007CDS4270314142703254-
GWHAAZE00000007CDS4270286742703025-
GWHAAZE00000007CDS4270259142702774-
GWHAAZE00000007CDS4270239042702513-
GWHAAZE00000007CDS4270208242702194-
GWHAAZE00000007CDS4270109442701262-
GWHAAZE00000007CDS4270081942700928-
GWHAAZE00000007CDS4270058342700652-
GWHAAZE00000007CDS4270035542700428-
GWHAAZE00000007CDS4270012142700216-
GWHAAZE00000007CDS4269988742699982-
GWHAAZE00000007CDS4269772242697849-
GWHAAZE00000007CDS4269738442697618-
GWHAAZE00000007CDS4269713142697295-
GWHAAZE00000007CDS4269692242697014-
GWHAAZE00000007CDS4269661242696758-
GWHAAZE00000007CDS4269631142696421-
GWHAAZE00000007CDS4269603342696212-
GWHAAZE00000007CDS4269524542695373-
GWHAAZE00000007CDS4269506142695156-
GWHAAZE00000007CDS4269374742693935-
GWHAAZE00000007CDS4269340642693572-
GWHAAZE00000007CDS4269292142693119-
Transcript Sequence

Network for GWHGAAZE024454

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD404604940.0027
PF00400.33WD404995370.06
PF00400.33WD409229560.0071
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.667
SRR3591706second leaf17.907
SRR3591707mature leaf29.859
SRR3591708Shoot apex17.830
SRR3591709Stem31.573
SRR3591710White floral bud45.839
SRR3591711White flower71.707
SRR3591712Green floral bud33.873
SRR3591713Yellow flower41.834
SRP173429 SRR8316895Juvenile bud stage 13.133
SRR8316896Juvenile bud stage 17.555
SRR8316897Juvenile bud stage 7.768
SRR8316894Third green stage 8.347
SRR8316900Third green stage 24.016
SRR8316901Third green stage 21.682
SRR8316898Complete white stage 15.804
SRR8316899Complete white stage 28.024
SRR8316903Complete white stage 30.516
SRR8316902Silver flowering stage21.879
SRR8316904Silver flowering stage39.164
SRR8316905Silver flowering stage17.226
SRR8316906Gold flowering stage 41.565
SRR8316907Gold flowering stage 38.041
SRR8316908Gold flowering stage 42.600
SRP132670SRR6706286Control28.307
SRR6706287Light intensity 50%30.848
SRR6706288Light intensity 20%30.720
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.829
CNS0095593Slightly white alabastrum(diploid) 214.270
CNS0095594Slightly white alabastrum(diploid) 314.755
CNS0095595Whole white alabastrum(diploid) 224.420
CNS0095596Whole white alabastrum(diploid) 323.386
CNS0095597Whole white alabastrum(diploid) 423.206
CNS0095598Silvery flower (diploied) 124.645
CNS0095599Silvery flower (diploied) 221.381
CNS0095600Silvery flower (diploied) 354.804
CNS0095601Golden flower (diploid) 122.112
CNS0095602Golden flower (diploid) 244.667
CNS0095603Golden flower (diploid) 344.545
CNS0095604Slightly white alabastrum(tetraploid) 122.314
CNS0095605Slightly white alabastrum(tetraploid) 220.406
CNS0095606Slightly white alabastrum(tetraploid) 325.739
CNS0095607Whole white alabastrum(tetraploid) 130.693
CNS0095608Whole white alabastrum(tetraploid) 228.735
CNS0095609Whole white alabastrum(tetraploid) 331.202
CNS0095610Silvery flower (tetraploid) 156.844
CNS0095611Silvery flower (tetraploid) 260.518
CNS0095612Silvery flower (tetraploid) 3135.654
CNS0095613Golden flower (tetraploid) 136.639
CNS0095614Golden flower (tetraploid) 239.416
CNS0095615Golden flower (tetraploid) 363.371
CRA001975CRR073297Stem 123.778
CRR073298Stem 221.270
CRR073299Stem 314.205
CRR073300Leaf 137.336
CRR073301Leaf 226.804
CRR073302Leaf 319.026
CRR073303Juvenile bud 124.499
CRR073304Juvenile bud 224.188
CRR073305Juvenile bud 326.049
CRR073306Third green 158.633
CRR073307Third green 239.253
CRR073308Third green 354.613
CRR073309Second white 155.940
CRR073310Second white 283.044
CRR073311Second white 395.882
CRR073312Silver flowering 195.906
CRR073313Silver flowering 2112.711
CRR073314Silver flowering 3109.045
CRR073315Gold flowering 113.993
CRR073316Gold flowering 220.842
CRR073317Gold flowering 312.530
CRR073318Tawny withering 123.671
CRR073319Tawny withering 220.486
CRR073320Tawny withering 318.388