Gene detail

Detail information of GWHGAAZE024456

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP30259.1	0	hypothetical protein JCGZ_17041 [Jatropha curcas]
COG	YP_004985011.1	2E-16	glycosyl transferase group 1 (modular protein), partial
trEMBL	tr\|A0A067KEK7\|A0A067KEK7_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP30259.1}
TAIR10	AT2G13290.2	2E-150	beta-1,4-N-acetylglucosaminyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	42739782	42740873	-
GWHAAZE00000007	mRNA	42739782	42740873	-
GWHAAZE00000007	exon	42739782	42740873	-
GWHAAZE00000007	CDS	42739782	42740873	-

Transcript Sequence
>GWHTAAZE024490 ATGGCTGCAAGGCATCTCCGCCTAACCTCTAGAAGATCAACACCTCAGTTTCTTTTTCTCATAATCTTTTTACTCGTGCCAACTTGTATTTTTGAGATCTTCACATACCGACAAAAAATCACCTATTTTTTTCGCCCGCTTTGGGATAAACCCCCACCCCCATTCGAGCACCTACCCCATTACTATGCTGAGAATGTCTCTATGGACCAGCTTTGCCGCCTCCACGGTTGGACCCTCCGAACTGAACCCCGTCGCGTATTCGATGCCATCATGTTCAGCAATGAGCTCGACGTACTCGAACTCCGTTGGCGCGAACTTCACCCCCACATTACAAAATTCATCATCCTCGAGGGAAACACCACCTTCACTGGCATCCCCAAACCTCTCTACTTTGCCTCTAACCGGGGCCGGTTCGCCTTTGCTGAGGAGAAAATAGTCCACGGTGTTTATCCAGGGCGGGTCGCTTCTGACAGGGTTCAAGAAGACCCGTTTAAGCTTGAGGCGGAGCAACGAATCACCATGAACGGAGTACTCCACCGTGCCGGCATTTCCCATGGGGACCTCTTGATAATGTCGGACGCTGATGAGATCCCGAGCACTCACACCGTGAAGTTACTTCAATGGTGTGATGATGTGCCTCCCGTCATTCATCTAGAGCTGAGACACTATTTGTATTCCTTCGAGTTTCCTGTTGACTACAGTAGCTGGCGTGCCTCAATCCACATTTTCGGGCCGTGGACGCAATACAGGCATTCTCGCCAAACTGACCTTATTCTTTCAGACGCTGGTTGGCATTGTAGCTTTTGCCTTAGGCACCTACAAGAGTTTGTATTCAAAATGACGGCTTATAGCCACGCAGACCGAGTGAGGAAAAAAGATTATCTTGATTATTCGAGGATTCAAAAGCTCATTTGTCGAGGTGACGATCTTTTCGATATGTTACCTGAGGAGTATAGTTTCCGGGAATTGATCAAGAAGATGGGACCCATACCCAGTTCAACTTCAGCCGTTCATCTACCAGCTTACTTGATAGAGAATGCGGACAAGTTCAAATTCCTTCTTCCCGGTGGTTGTTTGCGCAAACCATCTTGA

Network for GWHGAAZE024456

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04724.14	Glyco_transf_17	16	361	2.00E-175

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00737	MGAT3	Metabolic pathways	map01100
K00737	MGAT3	N-Glycan biosynthesis	map00510

Gene Ontology

GO term	Ontology	Name
GO:0006487	biological_process	protein N-linked glycosylation
GO:0016020	cellular_component	membrane
GO:0003830	molecular_function	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.735
	SRR3591706	second leaf	65.042
	SRR3591707	mature leaf	115.861
	SRR3591708	Shoot apex	31.187
	SRR3591709	Stem	17.912
	SRR3591710	White floral bud	102.823
	SRR3591711	White flower	46.373
	SRR3591712	Green floral bud	84.154
	SRR3591713	Yellow flower	15.940
SRP173429	SRR8316895	Juvenile bud stage	22.268
	SRR8316896	Juvenile bud stage	24.957
	SRR8316897	Juvenile bud stage	10.609
	SRR8316894	Third green stage	20.544
	SRR8316900	Third green stage	71.246
	SRR8316901	Third green stage	68.264
	SRR8316898	Complete white stage	39.116
	SRR8316899	Complete white stage	130.568
	SRR8316903	Complete white stage	81.216
	SRR8316902	Silver flowering stage	15.033
	SRR8316904	Silver flowering stage	34.081
	SRR8316905	Silver flowering stage	11.302
	SRR8316906	Gold flowering stage	15.291
	SRR8316907	Gold flowering stage	17.720
	SRR8316908	Gold flowering stage	21.439
SRP132670	SRR6706286	Control	74.754
	SRR6706287	Light intensity 50%	68.362
	SRR6706288	Light intensity 20%	66.081
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.471
	CNS0095593	Slightly white alabastrum(diploid) 2	34.037
	CNS0095594	Slightly white alabastrum(diploid) 3	26.261
	CNS0095595	Whole white alabastrum(diploid) 2	38.087
	CNS0095596	Whole white alabastrum(diploid) 3	42.917
	CNS0095597	Whole white alabastrum(diploid) 4	46.887
	CNS0095598	Silvery flower (diploied) 1	26.339
	CNS0095599	Silvery flower (diploied) 2	21.288
	CNS0095600	Silvery flower (diploied) 3	35.061
	CNS0095601	Golden flower (diploid) 1	14.609
	CNS0095602	Golden flower (diploid) 2	27.781
	CNS0095603	Golden flower (diploid) 3	25.103
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.907
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.406
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.872
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.481
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.393
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.844
	CNS0095610	Silvery flower (tetraploid) 1	70.894
	CNS0095611	Silvery flower (tetraploid) 2	38.398
	CNS0095612	Silvery flower (tetraploid) 3	47.649
	CNS0095613	Golden flower (tetraploid) 1	6.585
	CNS0095614	Golden flower (tetraploid) 2	83.171
	CNS0095615	Golden flower (tetraploid) 3	26.722
CRA001975	CRR073297	Stem 1	31.451
	CRR073298	Stem 2	29.767
	CRR073299	Stem 3	29.796
	CRR073300	Leaf 1	54.871
	CRR073301	Leaf 2	50.174
	CRR073302	Leaf 3	41.449
	CRR073303	Juvenile bud 1	64.353
	CRR073304	Juvenile bud 2	57.366
	CRR073305	Juvenile bud 3	73.500
	CRR073306	Third green 1	13.146
	CRR073307	Third green 2	15.371
	CRR073308	Third green 3	25.912
	CRR073309	Second white 1	3.758
	CRR073310	Second white 2	4.926
	CRR073311	Second white 3	2.900
	CRR073312	Silver flowering 1	2.811
	CRR073313	Silver flowering 2	4.509
	CRR073314	Silver flowering 3	3.469
	CRR073315	Gold flowering 1	26.955
	CRR073316	Gold flowering 2	34.267
	CRR073317	Gold flowering 3	42.206
	CRR073318	Tawny withering 1	14.863
	CRR073319	Tawny withering 2	14.476
	CRR073320	Tawny withering 3	13.896