Detail information of GWHGAAZE024457


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285365.10PREDICTED: TBC1 domain family member 17 isoform X3 [Vitis vinifera]
trEMBLtr|A0A061GMQ2|A0A061GMQ2_THECC0RabGAP/TBC domain-containing protein isoform 2 {ECO:0000313|EMBL:EOY31140.1}
TAIR10AT5G52580.11E-147RabGAP/TBC domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4277008142782118-
GWHAAZE00000007mRNA4277008142782118-
GWHAAZE00000007exon4278195742782118-
GWHAAZE00000007exon4278179842781846-
GWHAAZE00000007exon4278159242781699-
GWHAAZE00000007exon4278108942781206-
GWHAAZE00000007exon4278024442780298-
GWHAAZE00000007exon4277745942777863-
GWHAAZE00000007exon4277574242775801-
GWHAAZE00000007exon4277551442775612-
GWHAAZE00000007exon4277530342775413-
GWHAAZE00000007exon4277291442772985-
GWHAAZE00000007exon4277259942772801-
GWHAAZE00000007exon4277008142770450-
GWHAAZE00000007CDS4278195742782118-
GWHAAZE00000007CDS4278179842781846-
GWHAAZE00000007CDS4278159242781699-
GWHAAZE00000007CDS4278108942781206-
GWHAAZE00000007CDS4278024442780298-
GWHAAZE00000007CDS4277745942777863-
GWHAAZE00000007CDS4277574242775801-
GWHAAZE00000007CDS4277551442775612-
GWHAAZE00000007CDS4277530342775413-
GWHAAZE00000007CDS4277291442772985-
GWHAAZE00000007CDS4277259942772801-
GWHAAZE00000007CDS4277008142770450-
Transcript Sequence

Network for GWHGAAZE024457

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12068.9PH_RBD20656.40E-06
PF12068.9PH_RBD721711.70E-11
PF00566.19RabGAP-TBC3494542.10E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20168TBC1D15 Mitophagy - animal map04137

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf68.978
SRR3591706second leaf33.887
SRR3591707mature leaf35.662
SRR3591708Shoot apex38.357
SRR3591709Stem83.781
SRR3591710White floral bud52.211
SRR3591711White flower62.446
SRR3591712Green floral bud36.385
SRR3591713Yellow flower61.831
SRP173429 SRR8316895Juvenile bud stage 25.071
SRR8316896Juvenile bud stage 35.271
SRR8316897Juvenile bud stage 17.574
SRR8316894Third green stage 15.826
SRR8316900Third green stage 37.005
SRR8316901Third green stage 35.576
SRR8316898Complete white stage 22.358
SRR8316899Complete white stage 60.961
SRR8316903Complete white stage 36.505
SRR8316902Silver flowering stage24.744
SRR8316904Silver flowering stage36.029
SRR8316905Silver flowering stage17.269
SRR8316906Gold flowering stage 67.615
SRR8316907Gold flowering stage 57.578
SRR8316908Gold flowering stage 66.038
SRP132670SRR6706286Control43.498
SRR6706287Light intensity 50%42.074
SRR6706288Light intensity 20%43.498
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.765
CNS0095593Slightly white alabastrum(diploid) 231.163
CNS0095594Slightly white alabastrum(diploid) 328.289
CNS0095595Whole white alabastrum(diploid) 225.217
CNS0095596Whole white alabastrum(diploid) 322.306
CNS0095597Whole white alabastrum(diploid) 422.801
CNS0095598Silvery flower (diploied) 129.752
CNS0095599Silvery flower (diploied) 224.786
CNS0095600Silvery flower (diploied) 343.018
CNS0095601Golden flower (diploid) 128.365
CNS0095602Golden flower (diploid) 241.486
CNS0095603Golden flower (diploid) 345.591
CNS0095604Slightly white alabastrum(tetraploid) 126.799
CNS0095605Slightly white alabastrum(tetraploid) 222.500
CNS0095606Slightly white alabastrum(tetraploid) 347.984
CNS0095607Whole white alabastrum(tetraploid) 120.217
CNS0095608Whole white alabastrum(tetraploid) 217.943
CNS0095609Whole white alabastrum(tetraploid) 334.738
CNS0095610Silvery flower (tetraploid) 156.768
CNS0095611Silvery flower (tetraploid) 252.727
CNS0095612Silvery flower (tetraploid) 356.673
CNS0095613Golden flower (tetraploid) 130.968
CNS0095614Golden flower (tetraploid) 250.371
CNS0095615Golden flower (tetraploid) 351.328
CRA001975CRR073297Stem 140.035
CRR073298Stem 235.241
CRR073299Stem 336.090
CRR073300Leaf 142.381
CRR073301Leaf 239.433
CRR073302Leaf 336.058
CRR073303Juvenile bud 140.357
CRR073304Juvenile bud 229.109
CRR073305Juvenile bud 341.891
CRR073306Third green 133.377
CRR073307Third green 231.448
CRR073308Third green 335.867
CRR073309Second white 130.276
CRR073310Second white 239.202
CRR073311Second white 339.329
CRR073312Silver flowering 133.922
CRR073313Silver flowering 226.669
CRR073314Silver flowering 325.027
CRR073315Gold flowering 134.008
CRR073316Gold flowering 259.032
CRR073317Gold flowering 337.830
CRR073318Tawny withering 136.028
CRR073319Tawny withering 229.710
CRR073320Tawny withering 335.908