Gene detail

Detail information of GWHGAAZE024478

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10449.1	0	unnamed protein product [Coffea canephora]
COG	YP_004464004.1	2E-65	raffinose synthase
Swissprot	tr\|Q8RX87\|RFS6_ARATH	0	Probable galactinol--sucrose galactosyltransferase 6
trEMBL	tr\|A0A068UQA6\|A0A068UQA6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_45 {ECO:0000313\|EMBL:CDP10449.1}
TAIR10	AT5G20250.4	0	Raffinose synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	43311440	43315062	+
GWHAAZE00000007	mRNA	43311440	43315062	+
GWHAAZE00000007	exon	43311440	43312743	+
GWHAAZE00000007	exon	43313302	43313511	+
GWHAAZE00000007	exon	43313852	43313986	+
GWHAAZE00000007	exon	43314393	43315062	+
GWHAAZE00000007	CDS	43311440	43312743	+
GWHAAZE00000007	CDS	43313302	43313511	+
GWHAAZE00000007	CDS	43313852	43313986	+
GWHAAZE00000007	CDS	43314393	43315062	+

Transcript Sequence
>GWHTAAZE024512 ATGACGATCACGCCCGAAGTTAGGGTTTCTGATGGTAAACTGACCGTGAAGGACCGGACGATACTGACGAATGTGCCGGAAAATGTGGTTGCTACGTCGGGATCGGAGACCGGTCCGGCCGGAGGTGTTTTTATAGGTGCGATGTTTGATAAAATGCTTAGCAGGCACGTGGTGTCGTTAGGGACTTTGCGCGATGTTAGGTTCATGGCTTGTTTTAGGTTCAAGTTATGGTGGATGGCTCAGAAAATGGGTGACTACGGGCGTGACATTCCGCTCGAGACTCAATTTTTATTAATGGAGACTAAAGATGGTTCTAATTTACAATTAGAGGGAGGAAATGGTGATGATCAGATTGTCTACACCGTTTTCCTCCCTTTGATTGAGGGAGCTTTTCGAGCTTGTCTTCAAGGAAATCATAGAGACGAGCTGGAGCTTTGTCTGGAGAGTGGTGATCCGGACACAAAGGAGTCCGGGTTTACCCACTCTCTGTATGTAAGTGCAGGGACGGATCCTTTTAAGACCATCACTGATGCGGTGAGAGCTGTAAAGCTACAGCTCAAGACTTTCAGGCAACGTCACGAGAAAAAGTTGCCTGGAATAGTTGACTATTTTGGATGGTGCACGTGGGACGCGTTTTACCAAGAAGTAACTCAAGAAGGGGTCGAGTCCGGCTTGGAGAGTCTCAAGGCCGGTGGGACCCCTCCCAAATTCGTGATCATTGACGACGGATGGCAGTCTGTCGGCACTGACCCACAACCACAAGAAGAAGAACAAAGTACTAAGCAACCACCGTTATTGAGACTGACTGGGATTAAAGAAAATTCTAAGTTTCAAAACAAAGATGACCCGCAAATGGGGATCAAGAACATAATCAACATAGTGAAAGAGAAACACGGGTTAAAGTACGTGTACGTGTGGCACGCAATAACAGGATACTGGGGCGGGGTCAGGCCGGGGGTGGAGGAGTATGAGTCAGAGGTGAAATTTCCATCGGTGTCGAAAGGGGTGGTGGAGAATGAACCAGGGTGGAAGAGTGATGTAATAGCAGTGCAGGGGATGGGGCTAGTGAACCCAAAGAAAGTGTACAAGTTTTACAATGAGTTGCATGAGTATTTGGGAAGTGCAGGTGTAGATGGGGTTAAGGTGGATGTGCAGTGTATATTGGAGACACTTGGGGGTGGGTTGGGGGGTAGGGTGGAGCTCACAAGGCAGTACCATCAAGCACTTGATGCTTCTGTTGCTAGTCATTTTCCTGATAATGGGTGTATTGCTTGTATGAGCCACAATACTGATGCTCTTTACTGCTCCAAGCAGACGGCTGTGATTAGAGCATCCGATGATTTTTATCCACGCGATCCGGTCTCACACACCATCCACATAGCAGCAGTCGCATACAACAGTGTCTTCCTTGGAGAATTCATGCAGCCTGATTGGGACATGTTCCATTCCTTCCATCCGGCAGCTGAGTACCATGCATCTGCTAGGGCAATCAGCGGCGGGCCTATCTACGTTAGTGATGCACCTGGGAAGCACAATTTTGACATCTTGAAGAAGCTTGTTTTACCAGATGGTTCGGTTCTCCGAGCCCGTTATCCGGGTCGACCCACCAAGGATTGCCTCTTCTCTGACCCGGCCCGTGATGGTGTTAGCCTATTGAAGATATGGAACATGAACAAGTACACTGGAATACTAGGCATCTACAACTGCCAAGGTGCAGCATGGAACTCCATTGAAAGAAAAAACACTTTCCACCAAACACCGGTCGACTCCATAACGGGCTTCATCAGGGGCAAAGACGTCCATTTCATCGATCACGTCTCCATGGATCCAGATTGGAACAGTGACTGTGCTCTCTACTGCCACCGGACTGCCAATCTTTTCACTCTTCCTCATAATGCCGCTCTACCAGTGTCTCTCAAGGTCCTCGAGCATGATATATTCACAGTTACCCCTATTAAGATCTTGAAACCCGGGTTAGCCTTTGCTCCTTTAGGGCTCATCGACATGTACAACGCCGGTGGAGCCATTGAAGGGCTTAAATACGATGCAAAGAGTGATGAATGTTTTGAAAAGGAAGGCAATGGTGGTGTTTGCGAGAGGGTTGAGAATTTGAGCAATGAAGTGGTGGCTGTAGTTTCGGTTGAAGTTAAAGGGTGCGGCCGGTTTGGCGCATACTCGTCGGCTAAGCCGAGGAAGTGTACGGTCGGGTCAACCCTGGTTGAGTTTGAGTACGATTCAGGTTCGGGTTTGGTGGTCTTGAAATTGGATCATATGCCTGAGGGGGATAATAAGGTTCATTCTATTGAGATTGAATTATGA

Network for GWHGAAZE024478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05691.13	Raffinose_syn	7	754	0

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06617	E2.4.1.82	Metabolic pathways	map01100
K06617	E2.4.1.82	Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.107
	SRR3591706	second leaf	0.757
	SRR3591707	mature leaf	3.162
	SRR3591708	Shoot apex	6.397
	SRR3591709	Stem	11.134
	SRR3591710	White floral bud	91.350
	SRR3591711	White flower	202.723
	SRR3591712	Green floral bud	11.820
	SRR3591713	Yellow flower	453.781
SRP173429	SRR8316895	Juvenile bud stage	5.040
	SRR8316896	Juvenile bud stage	11.909
	SRR8316897	Juvenile bud stage	2.195
	SRR8316894	Third green stage	5.020
	SRR8316900	Third green stage	6.451
	SRR8316901	Third green stage	10.376
	SRR8316898	Complete white stage	24.705
	SRR8316899	Complete white stage	17.518
	SRR8316903	Complete white stage	46.608
	SRR8316902	Silver flowering stage	81.678
	SRR8316904	Silver flowering stage	93.359
	SRR8316905	Silver flowering stage	22.798
	SRR8316906	Gold flowering stage	97.634
	SRR8316907	Gold flowering stage	208.930
	SRR8316908	Gold flowering stage	128.515
SRP132670	SRR6706286	Control	28.182
	SRR6706287	Light intensity 50%	28.659
	SRR6706288	Light intensity 20%	13.701
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.016
	CNS0095593	Slightly white alabastrum(diploid) 2	4.975
	CNS0095594	Slightly white alabastrum(diploid) 3	10.693
	CNS0095595	Whole white alabastrum(diploid) 2	3.669
	CNS0095596	Whole white alabastrum(diploid) 3	2.597
	CNS0095597	Whole white alabastrum(diploid) 4	3.592
	CNS0095598	Silvery flower (diploied) 1	16.823
	CNS0095599	Silvery flower (diploied) 2	17.369
	CNS0095600	Silvery flower (diploied) 3	110.813
	CNS0095601	Golden flower (diploid) 1	21.879
	CNS0095602	Golden flower (diploid) 2	207.284
	CNS0095603	Golden flower (diploid) 3	199.796
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.838
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.728
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.254
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.794
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.263
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.432
	CNS0095610	Silvery flower (tetraploid) 1	170.133
	CNS0095611	Silvery flower (tetraploid) 2	83.423
	CNS0095612	Silvery flower (tetraploid) 3	42.177
	CNS0095613	Golden flower (tetraploid) 1	116.153
	CNS0095614	Golden flower (tetraploid) 2	159.046
	CNS0095615	Golden flower (tetraploid) 3	563.320
CRA001975	CRR073297	Stem 1	10.627
	CRR073298	Stem 2	17.601
	CRR073299	Stem 3	10.390
	CRR073300	Leaf 1	6.127
	CRR073301	Leaf 2	5.407
	CRR073302	Leaf 3	5.221
	CRR073303	Juvenile bud 1	3.848
	CRR073304	Juvenile bud 2	16.123
	CRR073305	Juvenile bud 3	5.268
	CRR073306	Third green 1	30.356
	CRR073307	Third green 2	18.281
	CRR073308	Third green 3	34.597
	CRR073309	Second white 1	9.912
	CRR073310	Second white 2	17.649
	CRR073311	Second white 3	24.846
	CRR073312	Silver flowering 1	57.470
	CRR073313	Silver flowering 2	45.906
	CRR073314	Silver flowering 3	60.805
	CRR073315	Gold flowering 1	0.727
	CRR073316	Gold flowering 2	0.937
	CRR073317	Gold flowering 3	1.222
	CRR073318	Tawny withering 1	19.617
	CRR073319	Tawny withering 2	32.124
	CRR073320	Tawny withering 3	15.269