Gene detail

Detail information of GWHGAAZE024491

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010260145.1	0	PREDICTED: leukotriene A-4 hydrolase homolog isoform X1 [Nelumbo nucifera]
COG	YP_633291.1	6E-178	M1 family peptidase
Swissprot	tr\|Q9FY49\|LKHA4_ARATH	0	Leukotriene A-4 hydrolase homolog
trEMBL	tr\|A0A022RJ70\|A0A022RJ70_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU39803.1}
TAIR10	AT5G13520.1	0	peptidase M1 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	43593832	43598880	+
GWHAAZE00000007	mRNA	43593832	43598880	+
GWHAAZE00000007	exon	43593832	43594215	+
GWHAAZE00000007	exon	43594811	43595407	+
GWHAAZE00000007	exon	43596113	43596346	+
GWHAAZE00000007	exon	43596442	43596768	+
GWHAAZE00000007	exon	43598584	43598880	+
GWHAAZE00000007	CDS	43593832	43594215	+
GWHAAZE00000007	CDS	43594811	43595407	+
GWHAAZE00000007	CDS	43596113	43596346	+
GWHAAZE00000007	CDS	43596442	43596768	+
GWHAAZE00000007	CDS	43598584	43598880	+

Transcript Sequence
>GWHTAAZE024525 ATGGCCCCAGTCGACCCCCACTCCTTCACCGACTCCACCCACCCCCTCACCACCCACATCTCCCTCTCTCTCTACTTCGATTTCTCCTCCTCCACCATCCTCGCCTCCGCCCTTCTCTCTCTCCAAAACCCTCACACCGGCCATCTCACTCTAGACACCCGGTCTCTCTCAATCTCCTCCGTCATCGATCCCCTCACCAACACGCCTATCCCCTTTTCTCTCTCCGAAGATACTGACCCCGTCAAGGGCCAGTTCCTCAATATTTCTCTCTCTAACCTTTCCAAGTTCTTAATTGTTTTCTCCACTTCCCCCTCTAGCTCCGCCCTTCAATGGCTCTTGCCGCCTCAGACCTTCAACAAGTCCTTCCCCTTCGTCTACACGCAGTGCCATTCGATCCACGCCAGGTCAATTTTCCCTTGCCAGGACACCCCGGCTGCTAGGATTTGCTACTCAGCTCGGCTCAACATCCCGCGCCAGCTGTCCGCTGTGATGTCAGCGCGGCATGTGGAGAGGAGGCCACCAGTGGCGGCCGAGGCTGGGCCGGTGTGTGATGACTCTGCTTGGTGTGCTGAAGGGAGGGTGGTTGAGGAGTTTGTGATGGAGCAACCAATTCCGCCGTACTTGTTTGCCTTTGCTGTGGGGGAAATTGGGTATAGAGAGGTGGGGCCAAGGACTAGGGTTTATGCAGAGTCTGTGCCAGCGGTGTTGGATTCAGCGGCGAGTGAGTTTGCGGGGACTGAGGATATGATTAGGGTTGGGGAGAGGTTGTTTGGGCCGTACGATTGGGAGAGGTTTGATTTGTTGGTGCTGCCGCCAAGCTTTCCTTACGGAGGAATGGAGAATCCGAGGATGGTGTTTTTGAACCCTACTGTGATTAAAGGGGATGCAAGTGGAGCACAGATGGTGGCGCATGAGTTAGCTCATAGCTGGACTGGGAATTTGATCACTAACAAAACCCATGAACACTTTTGGTTGAACGAGGGTTTTACAACATATGCAGAACGGAGAATTGTCGAGGATGTCCAAGGGGAGGACATAGCTGCACTAAAAATTGGAATTTGTTGGAAGGGTTTAAATGAGGATGTGGAGAGGTTCAAGGACAACATGGAGTTCACTAAGCTCAAAACCAACCAGGATGGAGTTGACCCTGATGATGTACATTCTCAAGTCCCATACGAAAAGGGTTTTCAGTTTTTGTGGCGCATTGAACGGCAGATTGGAAGACCTGCATTTGATGAATTCCTTAAGAAGTATATTGCGACTTTTAAGTTCCAGTCGATTGACACTGATATGTTTATAAATTTCCTAAAAGCGAATGTCCCTGGAATAGAGAATGATATTGACTTGATACTGTGGACTGAGGGTGTTGGTATCCCATCAGATGCCATGGAGCCAGTTTCAAACCTTTATACAAAAATTATTTCACTGGCACGTGAATTCAGTCTTGGTAGGATGCCAAGGGAGGATGAAGTTGCTGACTGGAAAGGACAGGAATGGGAGCTTTACCTGGAAAATCTTCCCAAATCTGTTGAAGCTTCACAGATTTCAGCCCTGGATGTTCGGTACAGGCTAGGAGAAATAAAAGATTATGAGGTGAAGGTAGCGTTTCTCCAACTGGCCATCTCGTCAAAGTGCAGAGACTACTATGGTGAGGTGGAGAGAACCCTAAAGGAAGTTGGGAGGATGAGGTATCTTCGCCCCCTCTACACTGCCCTTGTTCAAGGATCTGGTAAGGAAGAAGAGAAAATCTTCGCCAAAAGGGTCTTCTCGGAGGCTCGTGATACTTATCACCCCATTGCTCAAAGTGTTGTTGAGTCCATCCTCGCCAAGTATGTGTAA

Network for GWHGAAZE024491

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17900.2	Peptidase_M1_N	19	170	5.20E-11
PF01433.21	Peptidase_M1	252	439	9.60E-41
PF09127.12	Leuk-A4-hydro_C	494	608	9.50E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01254	LTA4H	Metabolic pathways	map01100
K01254	LTA4H	Arachidonic acid metabolism	map00590

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008237	molecular_function	metallopeptidase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.807
	SRR3591706	second leaf	22.876
	SRR3591707	mature leaf	25.922
	SRR3591708	Shoot apex	41.358
	SRR3591709	Stem	33.177
	SRR3591710	White floral bud	37.650
	SRR3591711	White flower	42.881
	SRR3591712	Green floral bud	39.415
	SRR3591713	Yellow flower	38.531
SRP173429	SRR8316895	Juvenile bud stage	20.550
	SRR8316896	Juvenile bud stage	31.474
	SRR8316897	Juvenile bud stage	12.751
	SRR8316894	Third green stage	11.487
	SRR8316900	Third green stage	32.362
	SRR8316901	Third green stage	29.093
	SRR8316898	Complete white stage	8.524
	SRR8316899	Complete white stage	36.716
	SRR8316903	Complete white stage	18.534
	SRR8316902	Silver flowering stage	9.681
	SRR8316904	Silver flowering stage	14.612
	SRR8316905	Silver flowering stage	6.975
	SRR8316906	Gold flowering stage	21.073
	SRR8316907	Gold flowering stage	19.232
	SRR8316908	Gold flowering stage	21.997
SRP132670	SRR6706286	Control	36.139
	SRR6706287	Light intensity 50%	34.915
	SRR6706288	Light intensity 20%	37.084
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.924
	CNS0095593	Slightly white alabastrum(diploid) 2	19.268
	CNS0095594	Slightly white alabastrum(diploid) 3	21.783
	CNS0095595	Whole white alabastrum(diploid) 2	18.586
	CNS0095596	Whole white alabastrum(diploid) 3	21.408
	CNS0095597	Whole white alabastrum(diploid) 4	16.597
	CNS0095598	Silvery flower (diploied) 1	22.015
	CNS0095599	Silvery flower (diploied) 2	18.172
	CNS0095600	Silvery flower (diploied) 3	25.883
	CNS0095601	Golden flower (diploid) 1	20.826
	CNS0095602	Golden flower (diploid) 2	27.662
	CNS0095603	Golden flower (diploid) 3	28.247
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.890
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.045
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.851
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.385
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.893
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.838
	CNS0095610	Silvery flower (tetraploid) 1	23.375
	CNS0095611	Silvery flower (tetraploid) 2	28.945
	CNS0095612	Silvery flower (tetraploid) 3	19.878
	CNS0095613	Golden flower (tetraploid) 1	11.570
	CNS0095614	Golden flower (tetraploid) 2	19.213
	CNS0095615	Golden flower (tetraploid) 3	17.585
CRA001975	CRR073297	Stem 1	37.385
	CRR073298	Stem 2	42.601
	CRR073299	Stem 3	37.603
	CRR073300	Leaf 1	37.228
	CRR073301	Leaf 2	38.635
	CRR073302	Leaf 3	31.536
	CRR073303	Juvenile bud 1	29.348
	CRR073304	Juvenile bud 2	22.673
	CRR073305	Juvenile bud 3	47.507
	CRR073306	Third green 1	11.727
	CRR073307	Third green 2	9.637
	CRR073308	Third green 3	11.323
	CRR073309	Second white 1	17.955
	CRR073310	Second white 2	12.407
	CRR073311	Second white 3	14.860
	CRR073312	Silver flowering 1	14.887
	CRR073313	Silver flowering 2	15.979
	CRR073314	Silver flowering 3	12.315
	CRR073315	Gold flowering 1	15.494
	CRR073316	Gold flowering 2	18.614
	CRR073317	Gold flowering 3	16.149
	CRR073318	Tawny withering 1	20.546
	CRR073319	Tawny withering 2	19.268
	CRR073320	Tawny withering 3	24.215