Gene detail

Detail information of GWHGAAZE024529

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003633841.1	0	PREDICTED: probable receptor-like protein kinase At5g15080 [Vitis vinifera]
COG	YP_003267608.1	4E-23	serine/threonine protein kinase
Swissprot	tr\|Q9LFP7\|Y5158_ARATH	0	Probable receptor-like protein kinase At5g15080
trEMBL	tr\|F6H5R1\|F6H5R1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47532.1}
TAIR10	AT5G15080.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	44296281	44301161	-
GWHAAZE00000007	mRNA	44296281	44301161	-
GWHAAZE00000007	exon	44296281	44296813	-
GWHAAZE00000007	exon	44299089	44299212	-
GWHAAZE00000007	exon	44299295	44299431	-
GWHAAZE00000007	exon	44300599	44300734	-
GWHAAZE00000007	exon	44300844	44301161	-
GWHAAZE00000007	CDS	44300844	44301161	-
GWHAAZE00000007	CDS	44300599	44300734	-
GWHAAZE00000007	CDS	44299295	44299431	-
GWHAAZE00000007	CDS	44299089	44299212	-
GWHAAZE00000007	CDS	44296281	44296813	-

Transcript Sequence
>GWHTAAZE024563 ATGAATAATAAAGACCAACCGGTTGCTCCCGTTTTATCGTCCTCAAACACTAGCAATGGTGAAAGTACTCCATCCACTCCCAACGTAGGAGAAGAACTGAAAATTTCTTCTCAGCTTCGAAAATTCTCTTTCGGTGAGCTCAAGGCAGCAACAAGGAATTTTAGACCTGAGAGTCTCCTTGGTGAGGGTGGCTTCGGCTGTGTCTTCAAAGGCTGGATCAACGAAAATGGAATCACACCAGTAAAACCAGGCACGGGTCTTACGGTTGCTGTTAAAACCCTCAATCATGATGGACTTCAGGGTCACAAAGAATGGCTTGCTGAAGTAAATTTTCTCGGCGACTTACTCCATCCTAACTTGGTTAAATTGATTGGGTGTTGCATCGAGGATGACCAAAGGCTGCTTGTGTACGAGTTCATGCCTCGGGGAAGCCTGGAGAATCACTTGTTTAGAAGGTCTCTTCCTCTTCCTTGGTCTATCAGAATGAAAATTGCCCTTGGTGCTGCAAAAGGACTTGCTTTTCTTCATGAGGAAGCTGAAAGACCAGTTATATACAGAGATTTTAAGACGTCTAATATTCTATTGGACGCGGACTACAATGCAAAGCTTTCTGATTTTGGACTTGCCAAAGACGGACCTGATGGAGATAAGACGCATGTATCTACTCGGGTAATGGGAACATATGGCTATGCAGCCCCTGAATATGTGATGACGGGACATCTAACGTCAAAGAGCGATGTCTACAGCTTTGGAGTTGTTTTACTTGAAATGTTGACTGGCCGAAGATCAATGGACAAAAATCGACCAAATGGGGAGCATAACCTCGTAGAATGGGCACGCCCACATCTAGGAGAGAGGCGGAGATTCTACCGTTTGATAGATCCACGCCTCGAGGGCCGATTCTCAATTAAAGGTGCACAAAAGGCTGCTCAGTTGGCTGCCCATTGCCTTGGCCGGGACCCGAAAGCCAGGCCGCTGATGAGTGAAGTTGTTGAAGCCCTAATGCCACTTCCTAACCTCAAAGACATGGCTTGTTCTTCATCCTACTACCAGGCCATGCAGGCCGAGTGGCATGGGGTTAACCCTAATGCTAGGACCAGTGTTAGAGTGCAGATGAAAAACGGGCAACCCATGAGAAGCCTCTCTATACCGAATGGGCCCCATGTGTCTCCGTATCACCACAACCATCCGTTCCGGTCTCCAAAACCGGTCAAACATTCGGAAGATCGAGTTCATGTTCGTGAGTAG

Network for GWHGAAZE024529

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	58	334	1.70E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.377
	SRR3591706	second leaf	18.764
	SRR3591707	mature leaf	17.005
	SRR3591708	Shoot apex	33.842
	SRR3591709	Stem	24.964
	SRR3591710	White floral bud	16.308
	SRR3591711	White flower	16.227
	SRR3591712	Green floral bud	22.430
	SRR3591713	Yellow flower	7.884
SRP173429	SRR8316895	Juvenile bud stage	10.017
	SRR8316896	Juvenile bud stage	16.903
	SRR8316897	Juvenile bud stage	8.113
	SRR8316894	Third green stage	6.405
	SRR8316900	Third green stage	18.670
	SRR8316901	Third green stage	16.437
	SRR8316898	Complete white stage	4.393
	SRR8316899	Complete white stage	24.976
	SRR8316903	Complete white stage	8.257
	SRR8316902	Silver flowering stage	2.660
	SRR8316904	Silver flowering stage	3.530
	SRR8316905	Silver flowering stage	1.585
	SRR8316906	Gold flowering stage	6.809
	SRR8316907	Gold flowering stage	6.765
	SRR8316908	Gold flowering stage	6.551
SRP132670	SRR6706286	Control	17.187
	SRR6706287	Light intensity 50%	16.672
	SRR6706288	Light intensity 20%	16.783
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.898
	CNS0095593	Slightly white alabastrum(diploid) 2	11.512
	CNS0095594	Slightly white alabastrum(diploid) 3	9.721
	CNS0095595	Whole white alabastrum(diploid) 2	10.433
	CNS0095596	Whole white alabastrum(diploid) 3	9.020
	CNS0095597	Whole white alabastrum(diploid) 4	8.101
	CNS0095598	Silvery flower (diploied) 1	14.167
	CNS0095599	Silvery flower (diploied) 2	11.018
	CNS0095600	Silvery flower (diploied) 3	13.231
	CNS0095601	Golden flower (diploid) 1	13.468
	CNS0095602	Golden flower (diploid) 2	15.221
	CNS0095603	Golden flower (diploid) 3	14.671
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.779
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.564
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.880
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.667
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.075
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.304
	CNS0095610	Silvery flower (tetraploid) 1	13.223
	CNS0095611	Silvery flower (tetraploid) 2	22.079
	CNS0095612	Silvery flower (tetraploid) 3	9.689
	CNS0095613	Golden flower (tetraploid) 1	5.203
	CNS0095614	Golden flower (tetraploid) 2	10.774
	CNS0095615	Golden flower (tetraploid) 3	5.674
CRA001975	CRR073297	Stem 1	24.590
	CRR073298	Stem 2	29.537
	CRR073299	Stem 3	30.803
	CRR073300	Leaf 1	31.929
	CRR073301	Leaf 2	29.561
	CRR073302	Leaf 3	30.573
	CRR073303	Juvenile bud 1	26.789
	CRR073304	Juvenile bud 2	19.608
	CRR073305	Juvenile bud 3	27.565
	CRR073306	Third green 1	1.826
	CRR073307	Third green 2	4.363
	CRR073308	Third green 3	3.549
	CRR073309	Second white 1	3.811
	CRR073310	Second white 2	4.966
	CRR073311	Second white 3	3.920
	CRR073312	Silver flowering 1	1.416
	CRR073313	Silver flowering 2	1.201
	CRR073314	Silver flowering 3	1.878
	CRR073315	Gold flowering 1	7.879
	CRR073316	Gold flowering 2	15.485
	CRR073317	Gold flowering 3	11.536
	CRR073318	Tawny withering 1	27.176
	CRR073319	Tawny withering 2	21.746
	CRR073320	Tawny withering 3	25.989