Gene detail

Detail information of GWHGAAZE024541

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009613896.1	4.4033E-127	PREDICTED: probable protein phosphatase 2C 27 [Nicotiana tomentosiformis]
Swissprot	tr\|Q69QZ0\|P2C27_ORYSJ	3E-108	Probable protein phosphatase 2C 27
trEMBL	tr\|K4CBJ3\|K4CBJ3_SOLLC	7E-124	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc07g007220.2.1}
TAIR10	AT2G25620.1	2E-62	DNA-binding protein phosphatase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	44769973	44773908	+
GWHAAZE00000007	mRNA	44769973	44773908	+
GWHAAZE00000007	exon	44769973	44770131	+
GWHAAZE00000007	exon	44771411	44771542	+
GWHAAZE00000007	exon	44772448	44772659	+
GWHAAZE00000007	exon	44773536	44773908	+
GWHAAZE00000007	CDS	44769973	44770131	+
GWHAAZE00000007	CDS	44771411	44771542	+
GWHAAZE00000007	CDS	44772448	44772659	+
GWHAAZE00000007	CDS	44773536	44773908	+

Transcript Sequence
>GWHTAAZE024575 ATGTGTTTGCAAGAGTTAGAACAACAAGTCAGTGAAGGAATTGAGGAAATGGGTGTCTCTAACAATGATCAAATTGCTATGCCTTGGCCTTTTGCTTCTGATTTCTTGCATACCCAGATCCAGAATTGTGCTACTACTACCCTTGGGAATTCATTTCCAATGGAAAGCATTTGTGAGGATACAGTTGTTGTAGACAAGAAACAGAATTTTTTAAATGACTTCAACCCGGCCCTTCGTTCTGGAGAGTGGTCCGATATCGCCATCGTTCTTATATGGAGGACACTCATATATGTGTTTGATGGCCACGGGGGAAAAGGCGCAGCACAATTTGTGCGTGATCATTTACCAAGGGTCATAGTGGAGGATGCCGATTTTCCTTTAGAATTGGAAAAGGTGGTTACTCGGTCATTCATGGAAACGGATGCTGCCTTTGCAAAATCTTGCTCTCTCGAGTCTGCACTATCTTCTGGTACAACCGCACTCACTGCAATGATATTCGGGAGATCTTTACTCGTGGCAAATGCCGGAGATTGCCGGGCAGTTCTATCTCGCCACAGCATGGCCATAGAAATGTCGAAAGATCACCGACCGTGCTGTGACAATGAAAGGATCCGGATAGAATCCGTGGGCGGGTTCATTGACGACGGTTACTTGAACGGTCAATTAGCCGTAACCCGAGCCTTGGGAGATTGGCACATCAAAGGGCTAAAGGAATTCGGCGGAAGGGTGGGACCCTTGAGCGCTGAACCTGAACTTAAACTTTTAACACTGACAAAAGATGACGAAGTTTTGATAATCGGTAGTGATGGGATATGGGACGGTTTAGAAGTCAAAACGCCGCTGACTTTATTCGAGGAGGCTACAAGAGCACAATGA

Network for GWHGAAZE024541

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	95	277	5.20E-50

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	DBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.577
	SRR3591706	second leaf	7.030
	SRR3591707	mature leaf	9.806
	SRR3591708	Shoot apex	5.368
	SRR3591709	Stem	7.390
	SRR3591710	White floral bud	13.372
	SRR3591711	White flower	30.174
	SRR3591712	Green floral bud	8.959
	SRR3591713	Yellow flower	5.834
SRP173429	SRR8316895	Juvenile bud stage	3.253
	SRR8316896	Juvenile bud stage	5.386
	SRR8316897	Juvenile bud stage	4.124
	SRR8316894	Third green stage	1.019
	SRR8316900	Third green stage	4.466
	SRR8316901	Third green stage	6.084
	SRR8316898	Complete white stage	3.189
	SRR8316899	Complete white stage	9.274
	SRR8316903	Complete white stage	4.392
	SRR8316902	Silver flowering stage	8.835
	SRR8316904	Silver flowering stage	7.491
	SRR8316905	Silver flowering stage	1.872
	SRR8316906	Gold flowering stage	7.145
	SRR8316907	Gold flowering stage	7.706
	SRR8316908	Gold flowering stage	8.341
SRP132670	SRR6706286	Control	6.283
	SRR6706287	Light intensity 50%	5.634
	SRR6706288	Light intensity 20%	5.094
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.032
	CNS0095593	Slightly white alabastrum(diploid) 2	3.126
	CNS0095594	Slightly white alabastrum(diploid) 3	3.073
	CNS0095595	Whole white alabastrum(diploid) 2	3.952
	CNS0095596	Whole white alabastrum(diploid) 3	2.366
	CNS0095597	Whole white alabastrum(diploid) 4	2.209
	CNS0095598	Silvery flower (diploied) 1	2.532
	CNS0095599	Silvery flower (diploied) 2	13.480
	CNS0095600	Silvery flower (diploied) 3	17.566
	CNS0095601	Golden flower (diploid) 1	20.549
	CNS0095602	Golden flower (diploid) 2	12.790
	CNS0095603	Golden flower (diploid) 3	13.693
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.081
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.224
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.823
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.649
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.892
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.406
	CNS0095610	Silvery flower (tetraploid) 1	65.391
	CNS0095611	Silvery flower (tetraploid) 2	31.104
	CNS0095612	Silvery flower (tetraploid) 3	21.618
	CNS0095613	Golden flower (tetraploid) 1	20.931
	CNS0095614	Golden flower (tetraploid) 2	26.147
	CNS0095615	Golden flower (tetraploid) 3	8.012
CRA001975	CRR073297	Stem 1	3.295
	CRR073298	Stem 2	3.132
	CRR073299	Stem 3	4.390
	CRR073300	Leaf 1	4.933
	CRR073301	Leaf 2	5.602
	CRR073302	Leaf 3	3.851
	CRR073303	Juvenile bud 1	4.999
	CRR073304	Juvenile bud 2	7.228
	CRR073305	Juvenile bud 3	5.636
	CRR073306	Third green 1	9.417
	CRR073307	Third green 2	4.040
	CRR073308	Third green 3	8.555
	CRR073309	Second white 1	15.411
	CRR073310	Second white 2	8.883
	CRR073311	Second white 3	9.744
	CRR073312	Silver flowering 1	7.616
	CRR073313	Silver flowering 2	6.343
	CRR073314	Silver flowering 3	5.763
	CRR073315	Gold flowering 1	3.584
	CRR073316	Gold flowering 2	4.809
	CRR073317	Gold flowering 3	3.518
	CRR073318	Tawny withering 1	6.120
	CRR073319	Tawny withering 2	8.938
	CRR073320	Tawny withering 3	5.342