Gene detail

Detail information of GWHGAAZE024546

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656541.1	5.1967E-138	PREDICTED: uncharacterized protein LOC100251651 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q05609\|CTR1_ARATH	2E-11	Serine/threonine-protein kinase CTR1
trEMBL	tr\|F6HCI9\|F6HCI9_VITVI	3E-138	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49935.1}
TAIR10	AT3G46920.1	1E-69	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	44795424	44797847	+
GWHAAZE00000007	mRNA	44795424	44797847	+
GWHAAZE00000007	exon	44795424	44796036	+
GWHAAZE00000007	exon	44796126	44796316	+
GWHAAZE00000007	exon	44797059	44797130	+
GWHAAZE00000007	exon	44797249	44797401	+
GWHAAZE00000007	exon	44797680	44797847	+
GWHAAZE00000007	CDS	44795424	44796036	+
GWHAAZE00000007	CDS	44796126	44796316	+
GWHAAZE00000007	CDS	44797059	44797130	+
GWHAAZE00000007	CDS	44797249	44797401	+
GWHAAZE00000007	CDS	44797680	44797847	+

Transcript Sequence
>GWHTAAZE024580 ATGACTCTTTGCTCATTAAGTGATGTTCCTATGTTGCATAATTTTCGTCCAATTGAGTCCTACGAAGTGGCACAACCTTCTTTTTTAGCTAATCATGGGTATCAGCGTTCAAAGTTCTCGGTTAACAATGTGGATGCTGATGAGGTGTTTTATGGGAGCCCCGCATCTTCTAGTGGTGATACATCACAGGTAATTGATCAAAGAATCCCACCAATTGGTGAATGGAAGGATATCATTTCACCATTCCATGCACAAATAACCCACAGTGACATTGAAGTCAATCCATCAACTAGCAATTTTTCATCTGTATGTACATCTAATAAGGTTGGGGATATCCAAGATAGCTCAAGTTCACTTTTTAGCAACCAACATCCATGGAATTTGCGGCATGATATTCATTTTCGACCTCCTAAATCAAACAAAATTCCAATGAAGAATGAAACCTTTGGTACCACGGATCCTTTTGGTGGCAATCGTTTAGGCTATTGTGGGGAATCACCAACGTATAGTAGTGGGGGTTCAATATCAGAAATGCGTTTAGAGGACGGATTTTTTTATCACCCGTCTTGTAATTTGGCCACAGATTTTGGTCAAGAGCAACGTTCCGTCAAAGGTTTGACAGACGAACGAATCAAGCAAGAACTCCAGGCTGTTGCAGAAGGAGTTGCTGTATCTGTTCTTCAACCGATCATGCCTTTGAATTCTCAGTTAATCCTACCTGGGAGGGCCGAGTCATCAGAATCCAATCAAAATAACGAACTTAAGAATACTAATACTGAAATGCAACATGGAGATAAACTTGAGGACGTCAACGCCAAAACAACAGAAAAGTCAAATCTTGGTTCTCCCGTATCAGATGGCATTGGCCGCTTACAGATTATAAAAGACTCTGACCTTGAAGAGCTTCGAGATTTAGGTTCTGGCACCTTTGGTACTGTTTACCATGGAAAGTGGAGGGGTTCAGATGTTGCAATCAAAAGAATTAATGATAGGTGCTTTGCTGGAAAACCTTCAGAACAAGAACGCATGAGAGATGACTTCTGGAATGAAGCAATCAAGCTTGCTGATTTGCACCATCCAAATGTGGTTGCATTTTACGGTGTTGTGCTTGATGGTCCTGGCGATACCGTTGCAACCGTAACCGAATACATGGCTAATGGTTCTTTAAGAAATGCTATAGAAAGGAATGAGAGGTAA

Network for GWHGAAZE024546

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	301	396	4.20E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-6

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.103
	SRR3591706	second leaf	0.354
	SRR3591707	mature leaf	0.480
	SRR3591708	Shoot apex	0.960
	SRR3591709	Stem	1.316
	SRR3591710	White floral bud	7.531
	SRR3591711	White flower	1.579
	SRR3591712	Green floral bud	6.720
	SRR3591713	Yellow flower	0.771
SRP173429	SRR8316895	Juvenile bud stage	2.207
	SRR8316896	Juvenile bud stage	5.776
	SRR8316897	Juvenile bud stage	4.827
	SRR8316894	Third green stage	2.306
	SRR8316900	Third green stage	7.077
	SRR8316901	Third green stage	7.159
	SRR8316898	Complete white stage	0.308
	SRR8316899	Complete white stage	0.533
	SRR8316903	Complete white stage	0.393
	SRR8316902	Silver flowering stage	0.209
	SRR8316904	Silver flowering stage	0.607
	SRR8316905	Silver flowering stage	0.060
	SRR8316906	Gold flowering stage	0.421
	SRR8316907	Gold flowering stage	0.337
	SRR8316908	Gold flowering stage	0.063
SRP132670	SRR6706286	Control	2.648
	SRR6706287	Light intensity 50%	2.767
	SRR6706288	Light intensity 20%	2.575
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.028
	CNS0095593	Slightly white alabastrum(diploid) 2	5.076
	CNS0095594	Slightly white alabastrum(diploid) 3	6.371
	CNS0095595	Whole white alabastrum(diploid) 2	10.988
	CNS0095596	Whole white alabastrum(diploid) 3	13.180
	CNS0095597	Whole white alabastrum(diploid) 4	13.096
	CNS0095598	Silvery flower (diploied) 1	0.649
	CNS0095599	Silvery flower (diploied) 2	1.956
	CNS0095600	Silvery flower (diploied) 3	0.328
	CNS0095601	Golden flower (diploid) 1	0.968
	CNS0095602	Golden flower (diploid) 2	0.208
	CNS0095603	Golden flower (diploid) 3	0.640
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.822
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.650
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.656
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.909
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.806
	CNS0095610	Silvery flower (tetraploid) 1	0.472
	CNS0095611	Silvery flower (tetraploid) 2	1.498
	CNS0095612	Silvery flower (tetraploid) 3	3.680
	CNS0095613	Golden flower (tetraploid) 1	0.194
	CNS0095614	Golden flower (tetraploid) 2	0.184
	CNS0095615	Golden flower (tetraploid) 3	1.981
CRA001975	CRR073297	Stem 1	2.412
	CRR073298	Stem 2	2.038
	CRR073299	Stem 3	1.143
	CRR073300	Leaf 1	5.102
	CRR073301	Leaf 2	4.817
	CRR073302	Leaf 3	1.868
	CRR073303	Juvenile bud 1	4.788
	CRR073304	Juvenile bud 2	2.175
	CRR073305	Juvenile bud 3	1.053
	CRR073306	Third green 1	1.871
	CRR073307	Third green 2	1.403
	CRR073308	Third green 3	1.878
	CRR073309	Second white 1	0.139
	CRR073310	Second white 2	0.349
	CRR073311	Second white 3	0.779
	CRR073312	Silver flowering 1	2.906
	CRR073313	Silver flowering 2	2.214
	CRR073314	Silver flowering 3	1.287
	CRR073315	Gold flowering 1	2.323
	CRR073316	Gold flowering 2	1.038
	CRR073317	Gold flowering 3	1.192
	CRR073318	Tawny withering 1	2.355
	CRR073319	Tawny withering 2	2.742
	CRR073320	Tawny withering 3	1.514